Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0998 ATGCTTCCCTTCCGAAAATTCTATGGTTTTGAGAGCTGGTTAGACTCTGATGTTCCCACTTCGTTCATAAAAAACGCTGTCCAATTAGACTGTGGAAGATCCAAGACTGAGAGAAAATCAACAGAAGCATGCAAAAGTCACAGGGAAGCCGAGAGGAGACGCCGGCAGCGAATCAACGCTCACCTCTCCACCTTGCGTTCTCTGCTCCCCAACGCTGCCAAGTCAGACAAGGCCTCGTTGCTGGCGGAAGTGGTTCAGCACGTGAAATGGTTGAAGAAGCAAGCGGATGACGTGGCATGCGGAGACTCAGCGTCGTCAAGCAGCGGCCAACCAGGTTCGGTTCGGCCTGAACCGCGGCCGTTTCCTGGGGAGTGTGACGAGGCGACGCTGAGTTATTGGGACGGTGATGATGGGGAAGCGAGAAGGATGAAAGTGACGCTATGTTGCGAGGACCGGCCCGGTCTCAACCGGGATTTGAGTCGGGCAATCGGGTCGGTTCGGGCCAAGGCAGTTCGGGCTGAGATGATGACGGTTGGGGGAAGGAGCAAAAGTGTTGTGGTGATAGAGTGGCCTGAAGCTGATGGTGAAGGAAGAGAGGAGGTGGAGGAAGGGGAGGTTCGGGCGTTGGAACGGGCTTTGAAGGCTGTGATAGAGAATCGGGCTTTTGTGGGCTTTGGAATGGGCCCGGTGGTGTTGGGCCAGAAGCGAGGGAGGGATTGTTATGGTTCTCCTAGCAGTGAGGTTGACTCTGCCTTCTTGCTCAAGAATGGGGACTTCTGCTAA 783 0.5504 MLPFRKFYGFESWLDSDVPTSFIKNAVQLDCGRSKTERKSTEACKSHREAERRRRQRINAHLSTLRSLLPNAAKSDKASLLAEVVQHVKWLKKQADDVACGDSASSSSGQPGSVRPEPRPFPGECDEATLSYWDGDDGEARRMKVTLCCEDRPGLNRDLSRAIGSVRAKAVRAEMMTVGGRSKSVVVIEWPEADGEGREEVEEGEVRALERALKAVIENRAFVGFGMGPVVLGQKRGRDCYGSPSSEVDSAFLLKNGDFC* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0998 260 Pfam Helix-loop-helix DNA-binding domain 44 91 IPR011598 GO:0046983
Apr9g0998 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Apr9g0998 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 98 IPR036638 GO:0046983
Apr9g0998 260 SUPERFAMILY ACT-like 143 216 IPR045865 -
Apr9g0998 260 Gene3D - 36 98 IPR036638 GO:0046983
Apr9g0998 260 PANTHER TRANSCRIPTION FACTOR BHLH30 25 238 IPR045847 GO:0003700|GO:0006355
Apr9g0998 260 PANTHER OS09G0463900 PROTEIN 25 238 - -
Apr9g0998 260 MobiDBLite consensus disorder prediction 100 125 - -
Apr9g0998 260 Gene3D - 139 221 - -
Apr9g0998 260 SMART finulus 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0998 Apr-Chr9 19090287 19091246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0998 39 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 38.579 4.52e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g0998 HLH 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0998 - - gmx:100816394 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0998 9 19090287 19091246 Apr9g0998 9 19090287 19091246 ECH