Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0984 ATGGGCTATTTCTCTTGCAACGGCGAGTCCGCAATAGCCACGTGCGACCCTCACTATTGGGACCTCAAGAAGAAGCCCACAGGCCCAACAAAAGCCCATCATAACAACTTAACCGTCAAGCACTTCGACTACACCGACCTCCTGGCCGCCACAAACTCTTTCTCCGCCGACAACTTCTTAGGGAAAGGCAGCTATGGCAGCGTCTACAAAGCCACGCTCGACGGCGGACACCTCATCGCCGCGGTAAAAAAAACCAAACCCTCCGCCGCAAGCCACCACAACGCCGCCGACAACGAGATCGAGATTCTATCCCACGTCACGAGCCCTCGCCTCGTCAATCTCATTGGCTTCTGTAACGACCGCAACAACAAACTCATCGTCGTCGAATATATGCCTAACGGTTCACTCTACGAGCTTCTCCACTCCAACACGGTTCGACCACCGGGTTGGAACCGGCGCGTCCGGTTTGCGGTTCAGGTAGCGAAAGCGGTTCGCGGTTTACACTGTTCTGAACCGCCGGTTATTCACCGCGACATTAAGTCATCAAATGTGCTTATTGACGAGAAGTGGAACGCGCGCCTGGGTGACTTTGGACTCGCGCTAAGGGGACACGTGGAGGACGTTCGCGTCAAATGCACGCCACCGGCGGGGACGTTAGGGTACCTCGATCCGTCCTATCTTGCACCGGGGGACCTTAGTGTTAAGAGCGATGTCTTCAGCTTCGGGATCTTGCTTCTCGAGATAGCGAGCGGTAGGAACGCCATTGATGTGAACCATAGTCCTCCGTCGGTGTTGGACTGGGCGGTGCCGTTGATACGGCGTGGCGAGTTCGCCGGAATCTGCGACCGACGGATCGGAGCGCCGCCGGATGCGGCGGCGTTTCGTGAGATGGTTGTGATGGCGGCGAGGTGCGTGAGGTCGACAGTGGAGAAGCGGCCGTCGATGGCGGAGGTGGTGGAGTGTCTTAAGGCAGTGAGGAAGAGGTTTCACGCGCCGGTGATATGGAAGCGACTGAAGAGGCGCGTGGCAACGCGTGGGAAAATGTTGGGGAATGATTGTGACAGAAGTGAGGAAGTTGTGAGGGTAGTTAAGGGTGGGAATAGAAGGAATGGCAAGGTATCGAGCGTGACGGGCGTAGAGTATGAAAGTGAACCTGCGAATCCTGCGGTGAGGATTAGGTTAAGGTCGAGGTCGAGATCGAGATCCATTGGTTCTGGTTTTTTTAGTGATATAAAAATGAGATCGGTTTTGGATCCGAACCTAATTGGTTTGGGGTTTGGTAGTAGGAAAGGGAAAATGCTCAAGAGATCAAGGTCTATGGGACATTATGGCAGCGAGGCAAAGACGTTTCATGAGAAACGTAGCGATAATAATAATGACACGAGTTGTTCGACAGAGATGGCACTGTCCAAGTTGGCCATTGCGGATAAGAAGTTGGAACAGAGAATGCTTGAAAAACCTTTGGTTTATTCTCATCGTTTTGAGAATCCAAGTAATTGA 1500 0.532 MGYFSCNGESAIATCDPHYWDLKKKPTGPTKAHHNNLTVKHFDYTDLLAATNSFSADNFLGKGSYGSVYKATLDGGHLIAAVKKTKPSAASHHNAADNEIEILSHVTSPRLVNLIGFCNDRNNKLIVVEYMPNGSLYELLHSNTVRPPGWNRRVRFAVQVAKAVRGLHCSEPPVIHRDIKSSNVLIDEKWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPSYLAPGDLSVKSDVFSFGILLLEIASGRNAIDVNHSPPSVLDWAVPLIRRGEFAGICDRRIGAPPDAAAFREMVVMAARCVRSTVEKRPSMAEVVECLKAVRKRFHAPVIWKRLKRRVATRGKMLGNDCDRSEEVVRVVKGGNRRNGKVSSVTGVEYESEPANPAVRIRLRSRSRSRSIGSGFFSDIKMRSVLDPNLIGLGFGSRKGKMLKRSRSMGHYGSEAKTFHEKRSDNNNDTSCSTEMALSKLAIADKKLEQRMLEKPLVYSHRFENPSN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0984 499 Pfam Protein tyrosine and serine/threonine kinase 57 322 IPR001245 GO:0004672|GO:0006468
Apr9g0984 499 ProSiteProfiles Protein kinase domain profile. 54 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0984 499 ProSitePatterns Protein kinases ATP-binding region signature. 60 84 IPR017441 GO:0005524
Apr9g0984 499 PANTHER OS01G0253100 PROTEIN 1 360 IPR045271 GO:0004714|GO:0006468
Apr9g0984 499 Gene3D Phosphorylase Kinase; domain 1 19 130 - -
Apr9g0984 499 SUPERFAMILY Protein kinase-like (PK-like) 32 322 IPR011009 -
Apr9g0984 499 Gene3D Transferase(Phosphotransferase) domain 1 131 337 - -
Apr9g0984 499 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 360 - -
Apr9g0984 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Apr9g0984 499 SMART serkin_6 54 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0984 Apr-Chr9 18875998 18877788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0984 42 323 Receptor kinase-like Gene Family AT3G59420 42.014 5.52e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Apr9g0984 PK_Tyr_Ser-Thr 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0984 - - vra:106764162 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0984 9 18875998 18877788 Apr9g0984 9 18875998 18877788 ECH
Apr9g0984 9 18875998 18877788 Apr5g1020 5 14800084 14801556 PCT