Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0983 ATGGAATTTGACGAACAAGAAGAGCAAGAGGAGGAAATGGGGATGCGGGAGCCGCCGCAACCGCCGCCGCCGAGTTACGACTCGCTAGGGAACTCGGCAACCAGGTCCAAAATCGGCGGCGGTGAGGGAAGGAAGGGCGGGTTCGGCGCTGCTGTGAGGTACAGAGAATGCCAAAAGAACCACGCCGTGAGCTTCGGCGGCCACGCGGTCGACGGTTGCTGTGAGTTCATGGCTGCTGGGGAAGACGGCACGCTGGAGGCCGTGATCTGCGCTGCCTGTAACTGTCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGACGACGTTCCACCACCGCCCGCAGCCGCCGCCGCTACATCACCACCAATTGTCCCCTTACTACCACCGGGTACCGCAGCATCCCGCTGCCGGTTACATCCACCACCACCTAGCAACTCCGATGGCGCATCACCGACCTCTGGCCCTCCCGGCGGCGGCTTCCGGGGGTGGACTTAGCAGAGAAGAGGAGGACATGTCGAATCCGAGCAGCAGCGGTGGCGGTGGCTGCGGAGGAGGATCGAAGAAGCGGTTTAGGACGAAGTTCACGCCGGAACAGAAGGATAAGATGCTTGCATTTGCGGAGCAACTTGGATGGAGAATCCAGAAACATGATGAACCTGCTGTGGAACAGTTCTGTGCTGAGACCAATGTGAAGCGAAACGTTCTCAAGGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 759 0.5876 MEFDEQEEQEEEMGMREPPQPPPPSYDSLGNSATRSKIGGGEGRKGGFGAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEIDGEMTTFHHRPQPPPLHHHQLSPYYHRVPQHPAAGYIHHHLATPMAHHRPLALPAAASGGGLSREEEDMSNPSSSGGGGCGGGSKKRFRTKFTPEQKDKMLAFAEQLGWRIQKHDEPAVEQFCAETNVKRNVLKVWMHNNKNTLGKKP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0983 252 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Apr9g0983 252 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Apr9g0983 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 49 251 - -
Apr9g0983 252 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 251 - -
Apr9g0983 252 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 246 IPR006455 -
Apr9g0983 252 SUPERFAMILY Homeodomain-like 176 250 IPR009057 -
Apr9g0983 252 Gene3D - 174 249 - -
Apr9g0983 252 MobiDBLite consensus disorder prediction 158 192 - -
Apr9g0983 252 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Apr9g0983 252 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0983 Apr-Chr9 18854236 18855352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0983 1 248 ZF-HD Transcription Factor Family AT4G24660 56.225 8.90e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr9g0983 ZF-HD_dimer 6.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0983 - - gmx:100776421 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0983 9 18854236 18855352 Apr9g0983 9 18854236 18855352 ECH
Apr9g0983 9 18854236 18855352 Apr5g1019 5 14786118 14787164 PCT