Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0966 ATGATCAATCAAATAAGCATGCAAAAGGAGAGTCCTCTAAGGCTCCACAGGTTCGACCAAGTCCATACATGGCTTGCTTTATTAAACCTTCTTCTCATTCAAATCTCACCTTCGGTAACAGCTCAACCGGTGACACCAACAGTGGACCCCGACAGTAACAAATCCGCAGCAACCATCATGGCCATTGTTGCCGTCATGTTCCTCATCTCAGGGCTTCTTTCTCTCTTCTCTCGTAAATGCACTGACCGGCAGGCCCAAACACAAGCCAGACTCGACCTCACTCTTCCTACCGGCGGAAGCGGTAACCGGTCGCGGACGGAACCCAACGGTCTTAACCAAGAAATCATCGACACTTTCCCAACGTTCCTCTACTCAGATGTGAAGGGTCTCAAAACCGGAAAAGACACGTTAGCGTGCGCCGTTTGCTTGAACGAGTTCCAAGACGATGAAACCCTCCGCATGCTCCCCAAATGCTGCCACGTGTACCACGTCGTTTGCATCGATGCTTGGTTAGCCTCCCACTCCACTTGCCCGGTTTGTCGTGCCAACCTCGTTCCAACACCCGAAGACAACGACGTCAACATAAACATAAACATGATCGCGCCTCCGACGTTGTCCATGCACGATCACGAGCATGAACATGAGACTCTTGTTGAGGACCATAAGAGAGACAATGACAATGACGTGGACTTCCTTCGTAGGATTCGCGCAATGAATCAGTGTCGTCCATCACGGTCGAGATCAACCGGGTTCTTATCTTCCCTCTTGTTTCCACGGTCAAACTCGATGGGTCAATTGGTGCTTCCTGGGGAGAATCTTGAAAGGTTTACTCTGAGGTTACCGGATGAGGTTCGAAGCCAGATGGTGAACTCGACGCTGAAGCGTGCGAATAGTTGCGTGTGTTTTACGAGAATGAGGAGTGGCACGTGGAGTTATAGGACGAGAAGCGTGGGAAGTGGACTTGGAAGGGGGCATGTGCATTATGAGAGGTTTGGTAACGAGGAACAATGTGGATTCCCTTTGACGCAACCTGGTCGTCTCGTCAATAACGGTTGGAATAGATCAGCGAGAAGATCACCTGTTCAGTGTTCTCTTGGTGTGCCATTGGATAATAATGTTGGTGAGCGATATTCTGATTTCTTCCGTCTTGGGTAG 1155 0.4987 MINQISMQKESPLRLHRFDQVHTWLALLNLLLIQISPSVTAQPVTPTVDPDSNKSAATIMAIVAVMFLISGLLSLFSRKCTDRQAQTQARLDLTLPTGGSGNRSRTEPNGLNQEIIDTFPTFLYSDVKGLKTGKDTLACAVCLNEFQDDETLRMLPKCCHVYHVVCIDAWLASHSTCPVCRANLVPTPEDNDVNININMIAPPTLSMHDHEHEHETLVEDHKRDNDNDVDFLRRIRAMNQCRPSRSRSTGFLSSLLFPRSNSMGQLVLPGENLERFTLRLPDEVRSQMVNSTLKRANSCVCFTRMRSGTWSYRTRSVGSGLGRGHVHYERFGNEEQCGFPLTQPGRLVNNGWNRSARRSPVQCSLGVPLDNNVGERYSDFFRLG* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0966 384 MobiDBLite consensus disorder prediction 91 110 - -
Apr9g0966 384 SMART ring_2 139 180 IPR001841 -
Apr9g0966 384 CDD RING-H2_EL5_like 139 181 - -
Apr9g0966 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 320 - -
Apr9g0966 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 187 IPR013083 -
Apr9g0966 384 Pfam Ring finger domain 138 181 IPR001841 -
Apr9g0966 384 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Apr9g0966 384 SUPERFAMILY RING/U-box 119 195 - -
Apr9g0966 384 PANTHER RING FINGER DOMAIN-CONTAINING 6 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0966 Apr-Chr9 18556728 18557882 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0966 59 292 Rapid Response to Elicitors AT2G35000 39.024 3.23e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0966 K10664 - gmx:100814384 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0966 9 18556728 18557882 Apr9g0966 9 18556728 18557882 ECH