Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0965 ATGGCCCTAGAGGCTGTGGTTTTCCCACAAGATCCATTCACTTATGGTTGCAAAGATTACATGTACTCGTTAGTAGGAGGGTTCCAAGGATCAGAAGACAAAGCCCTTGTGGGAATCATCAACAACAACAAAGAGCACAATCTGCATGCAAATTGGGAGTCGTCTTCTTCTCCTTCAGTGTTGCAAAATGTCAAGGATCAGTGGGATTCACACTCCTCCCCTGAACCCACTCCCACCAACACCACCACAGGTAGGCGCAAACGACGTCGTACCAAGAGTACCAAGAACAAGGAGGAAATCGAGAACCAAAGAATGACCCACATTGCCGTTGAGCGAAATCGAAGGAAACAAATGAACGAGTATCTCGCTGTTCTCAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCAATTATTGGGGGTGCCATTAACTTCGTGAAGGAGTTGGAGCAGCTTCTACAGTGCATGAAATGCCAAAAGAAAACAAAGGAACAAGGACAAGTTAATGGGTTGGGTGACTCGTCACCGTTTTCTGAGTTCTTCATGTTTCCTCAGTACTCCACGCGTGCAACACAGAGTAACACGGGTTACCCTGCCACGAGCGATGGCAATACGGCACAGAACCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTTGTGGATAGCCATGCCAATATAAAGATACTCTCAAAGAAACGACCTGGGTTGCTTTTGAAGATGGTTGTTGGGCTTCAGAGTATTGGTCTTATCATTCTCCACCTTAATGTTACCACTGTGGACGATATGGTCCTTACCTCAGTTAGTGTAAAGGTGGAGGAAGGGTGTCAGCTGAACACAGTGGATGAAATTGCAGCTGCTGTGAATCAACTATCACTCACGGTTCATGAGGAAGCTGCTTTCAGCTAA 921 0.4669 MALEAVVFPQDPFTYGCKDYMYSLVGGFQGSEDKALVGIINNNKEHNLHANWESSSSPSVLQNVKDQWDSHSSPEPTPTNTTTGRRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKCQKKTKEQGQVNGLGDSSPFSEFFMFPQYSTRATQSNTGYPATSDGNTAQNHSWAVADIEVTLVDSHANIKILSKKRPGLLLKMVVGLQSIGLIILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVNQLSLTVHEEAAFS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0965 306 CDD bHLH_AtFAMA_like 105 172 - -
Apr9g0965 306 MobiDBLite consensus disorder prediction 50 81 - -
Apr9g0965 306 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 304 - -
Apr9g0965 306 SMART finulus 108 159 IPR011598 GO:0046983
Apr9g0965 306 Coils Coil 150 170 - -
Apr9g0965 306 Pfam Helix-loop-helix DNA-binding domain 103 154 IPR011598 GO:0046983
Apr9g0965 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 169 IPR036638 GO:0046983
Apr9g0965 306 PANTHER MAX DIMERIZATION, MAD 1 304 - -
Apr9g0965 306 MobiDBLite consensus disorder prediction 50 100 - -
Apr9g0965 306 Gene3D - 90 170 IPR036638 GO:0046983
Apr9g0965 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 153 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0965 Apr-Chr9 18507876 18509610 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0965 1 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 52.288 6.24e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g0965 HLH 6.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0965 - - gmx:100797856 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0965 9 18507876 18509610 Apr9g0965 9 18507876 18509610 ECH
Apr9g0965 9 18507876 18509610 Apr5g0981 5 14378700 14379914 PCT