Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0964 ATGGAGATTAAACACCGAAAACTCTTTCCTTCAGACACAACCACAAACCAAACCCAAGATTGTTATGGCTTTTGTGACCCAGCGTGTCCTTACAACTGCTACTCTAACCCAGATTACTTCTTCTCTCCACCACCACCACCATCATCTATTTCAGAACACTCGAATCAAGTTAACCACATATCCTCCTACTTGATCATCCTTGTTACTCTATTCACAGTCATTTTTCTTGTTGTGGCTTTCTATGTGATCAAAGTGAAGTGTTATGCTGATTGGTGTGGCTGGAGATTCAATGGGTCAGTTCCTTCTCAAACAGACAACACTGAGGAATTTCTCAATGAGAACCAAGTTGATCACCCCGTGTGGCTCATCACCACCGTTGGTCTGCAACAATCAATCATAAACTCGATTACAGTTTGCAAGTATAAAAAAGATGAAGGGTTGATTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAGTTTCAAGAAGAAGAGACCTTAAGACTTTTGCCAAAGTGCAACCATGCGTTCCACATCCCTTGTATTGACACGTGGTTGAGATCACACACCAATTGCCCGCTTTGCCGTGCTGGTATTGTCTCTAGCAATGTGGCTCCTGATTCAGCCACGTCGAATTTCGCTTCAACGGAGCAAGAAAATGCAAACTTCGCTAGAAATCATGAGACCCTTTTGGAGAATTCGATTAATGATGGTGAGTTCAGTAGCAACATGGTTATCAATGTGGCCATGGAAAGCAGAACAGGTACAGGGGAATCAAGTGAAGGACTTGAGTTCATTGATGAATCAAATTATAAGGAGAGAGTTAATGATTCAACGGAGAATCAAATAGAGAAGGGGTCTGTCTCAAGTGATTCTATATTGGAGGAAAATTCTTGTTCTACAGAATCTGAAAGCAAATGCAATCATGTTGTTGATCATGTATTGGGTGACAGTGACACACAGTTGCACATGGTTAATCTTTGGAAGCAAAAGCAAGATGGAGATTGCTACTCAAAAACGTATAAAAGTATGCGTCGTTCCTCAATTGAAGAATGTTTACACATGAGCCCGGTGTCTATGAAAAGGTCATTCTCCTGCAATGGAAGGATTCTATCTTCTAGAGGTTACGTTAGTCTAAACTCTAGACTCAACTCCTCCTCATTAGAATTTTCAATCGGTCAAAGATGA 1185 0.4127 MEIKHRKLFPSDTTTNQTQDCYGFCDPACPYNCYSNPDYFFSPPPPPSSISEHSNQVNHISSYLIILVTLFTVIFLVVAFYVIKVKCYADWCGWRFNGSVPSQTDNTEEFLNENQVDHPVWLITTVGLQQSIINSITVCKYKKDEGLIEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAGIVSSNVAPDSATSNFASTEQENANFARNHETLLENSINDGEFSSNMVINVAMESRTGTGESSEGLEFIDESNYKERVNDSTENQIEKGSVSSDSILEENSCSTESESKCNHVVDHVLGDSDTQLHMVNLWKQKQDGDCYSKTYKSMRRSSIEECLHMSPVSMKRSFSCNGRILSSRGYVSLNSRLNSSSLEFSIGQR* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0964 394 SMART ring_2 153 194 IPR001841 -
Apr9g0964 394 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Apr9g0964 394 CDD RING-H2_PA-TM-RING 152 195 - -
Apr9g0964 394 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 376 IPR044675 -
Apr9g0964 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 203 IPR013083 -
Apr9g0964 394 SUPERFAMILY RING/U-box 143 200 - -
Apr9g0964 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 376 - -
Apr9g0964 394 Pfam Ring finger domain 152 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0964 Apr-Chr9 18481430 18483105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0964 4 265 C3H Transcription Factor Family AT1G72220 42.105 1.33e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0964 - - aprc:113847030 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0964 9 18481430 18483105 Apr9g0964 9 18481430 18483105 ECH