Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0939 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACGAAGGTGTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAAATGCGCAAATATTTTGAACAGTTTGGTGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGAGCATGTGCTGATCCAAACCCAGTGATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTTGGAAGGCCTAGACCATCACCACCCAGAGGAAGGGGTACATTCCAAAGTGGGGTGGGGACAGGAGCACCAGGAACGGCGTCGTACAGTGGCGTGCCGGCGGGAGGAGCGCCGCCGTTGCCACCGCCACCGCCGGTATTGTACCCTCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACATTGTATAACCCACAAATTCATCAACCTCAATACTACCAACAACTTTATGGACCATCATCTTCCACCATGGGTTCCCCATATTACTATGGTTATTCTATGCAAGCACCAAGAGGCACATTTTCTACACCCCAAGCACATCGCATACCAGCTGGACCCTCCTATTTATACTACCCTACACCCATGGAAAGCTCCTTCTCTGCATATCGTCCACCTCAATTGCAACAACTAGCAATAAGGCAACCCCCTCCTTCCCCTAGTGATTCACAGACTCAACAGCGTACCTCCTCCGAGACAGCAGCTGGAGTAGTTATAACTTCAGAAAGTTCAAATAGCCAAGGGAAGAACTAA 822 0.4818 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQSGVGTGAPGTASYSGVPAGGAPPLPPPPPVLYPPYGYPTYTPDYGYHQATLYNPQIHQPQYYQQLYGPSSSTMGSPYYYGYSMQAPRGTFSTPQAHRIPAGPSYLYYPTPMESSFSAYRPPQLQQLAIRQPPPSPSDSQTQQRTSSETAAGVVITSESSNSQGKN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0939 273 MobiDBLite consensus disorder prediction 92 135 - -
Apr9g0939 273 PANTHER - 1 263 - -
Apr9g0939 273 PANTHER GEO13361P1-RELATED 1 263 - -
Apr9g0939 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Apr9g0939 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Apr9g0939 273 SUPERFAMILY RNA-binding domain, RBD 9 116 IPR035979 GO:0003676
Apr9g0939 273 Gene3D - 3 112 IPR012677 -
Apr9g0939 273 CDD RRM_RBM24_RBM38_like 16 91 - -
Apr9g0939 273 MobiDBLite consensus disorder prediction 224 273 - -
Apr9g0939 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0939 Apr-Chr9 18044350 18048627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0939 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.51e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0939 K25006 - gmx:100787086 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0939 9 18044350 18048627 Apr9g0939 9 18044350 18048627 ECH
Apr9g0939 9 18044350 18048627 Apr1g0086 1 952696 956935 PCT