Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0933 ATGGGAAGGCCCCCATGCTGCGATGAAACTGGCCTTAAGAAGGGACCTTGGACTCCTGAAGAAGATCTAAAGCTAGTCAATTACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTACCTAAGTTAGCAGGTCTTAACAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGATATCAAGAGAGGAAAATTTTCTCAAGAAGAAGAGCAGACAATTCTGCATCTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACCCATCTTCCGGGCAGGACAGATAATGAGATCAAGAATTTCTGGAACACTCACTTAAAGAAAAAGTTGATTCAGATGGGTTTTGATCCAATGACACACCAACCAAGAACTGATCTTTTTTCCACCTTGCCATATCTACTAGCTTTGGCCAACATGACAGACCTTATGGATCATCAATCCTTTGATGAACAAGCTATGAGGTTACATGCAGAGGCCATTCATGTGGCAAAGCTTCAAAGCCTTCATTATTTACTCCAATCCACAAGTTCCGTAGGTACCAATAACTCCTATGACCAAAATGCCATCACAAACATGGAAGCTTTTAATTTGTTAGATTCAATCACTAATGTCAACGACAGTAACCAAGTTTTGGACTCTCCACAACTTGATAATTCTGCCTCAATTTCTCATGGGTTTGATCATAGCTCCCAACCACTCCACCACTCAAGCATGTTATCTCACTTTTTAGACCCACCACAAGTCTCTTTCAGTTCCCAATCTCGTTTGAATAATGAGCAGGGTCAAGGGACTAATAGCTTTACAATGATGGGTCAAGGTGATCACATAATTGATGGCTCTCCTTGCATTATAGCATCTCCTGCTCCATCTATTCCATTGAATGTGACAAGGACCACAACAAGCAATCCAGGAGATGCCAATAGCTGCACTTCAAGCTATGGAGGAACCCCATCTTGTTGGCCTGAAATATTTTTTGAGGACCCCATTTTGCATGAATAA 1017 0.4179 MGRPPCCDETGLKKGPWTPEEDLKLVNYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLFSTLPYLLALANMTDLMDHQSFDEQAMRLHAEAIHVAKLQSLHYLLQSTSSVGTNNSYDQNAITNMEAFNLLDSITNVNDSNQVLDSPQLDNSASISHGFDHSSQPLHHSSMLSHFLDPPQVSFSSQSRLNNEQGQGTNSFTMMGQGDHIIDGSPCIIASPAPSIPLNVTRTTTSNPGDANSCTSSYGGTPSCWPEIFFEDPILHE* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0933 338 CDD SANT 69 112 IPR001005 -
Apr9g0933 338 Gene3D - 13 66 - -
Apr9g0933 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr9g0933 338 CDD SANT 16 61 IPR001005 -
Apr9g0933 338 Gene3D - 69 116 - -
Apr9g0933 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Apr9g0933 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr9g0933 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Apr9g0933 338 SMART sant 13 63 IPR001005 -
Apr9g0933 338 SMART sant 66 114 IPR001005 -
Apr9g0933 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr9g0933 338 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 259 - -
Apr9g0933 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr9g0933 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr9g0933 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0933 Apr-Chr9 17934718 17936120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0933 1 336 MYB Transcription Factor Family AT1G34670 53.533 4.22e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g0933 Myb_DNA-binding 6.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0933 K09422 - gmx:100811162 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0933 9 17934718 17936120 Apr9g0933 9 17934718 17936120 ECH