Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0920 ATGACGAACCAGAATGTGGTCTCTCCTATTGGGAAATCACATGTTAACAACACGCTTGTGGAGTTGGCAATGTCCATTTCTAACTCCAGTGCTCTACCTAGAGCCGCAGTGCCTGGATTAATGGCTTTGCTTAATGGCCTTTTGGGCCTGCCCCAGAAGAAGCTCGTAATCAAAACGTTGGAGGATGGAGCTGGAAAAGGATCAACCAAAGTTAACCCGTGGATTGATTCAATGAGAGCCTCTTCTCCTACACGAGCCAAATCCACCTTGCTTTCTTCACAAAACCAAGACCCAAATCCTTGGACCCTTTACCATCCTTCGGCACTGAACATGTTTGATCAGATAATATATGATTCCAGGGGGAAGCAGGTTGTGACTTTTCTTGATTATGATGGAACTCTCTCTCCAATTGTTGCAGATCCAGATAAAGCATACATGAGTAAAAAGATGAGAGCGACATTAAAGGACATAGCAAGGCATTTTGCCACCGCCATCGTCAGTGGAAGGTCCATAGACAAGGTATATAGCTTTGTTGGATTGGCAGAACTGTACTATGCCGGGAGCCATGGCATGGACATTAAGGGACCAACAAATAAGCGAAGTACTAAGAAAGGTAATGAAGCAGTGCTCTTGCAACCCGCGAGTGAATTCCTACCCATGATCAATGAGGTGTACAATATCTTGGTGGAGAAAACAAAGTCTGTCCCGGGTGCTAAGGTAGAAAATAACAAGTTCTGCTTGTCCGTGCACTATCGCTGTGTTGACGAAAAGAGTTGGGTGGCACTGGCAGAGCAAGTTAACTTGGTGCTGAATGAGTACCCAAAACTTAAGCTAACCCAAGGGAGAAAAGTGCTTGAGATTCGACCAAACATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGTTGGAGAAGTCACTAGGATATGCTAATTCTAATAACGTATTTCCAATCTATATTGGTGATGATCGCACTGACGAAGATGCTTTTAAGGTTTTACGCAGTAGGGGCCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACCGATGCTTCCTACACTTTGCAAGATCCATCTGAGGTTGGGCAGTTTTTGCGGCATTTGGTGGAGTGGAAAAGAACCAGTTCTCACCACCACAAGTTGTAG 1152 0.4436 MTNQNVVSPIGKSHVNNTLVELAMSISNSSALPRAAVPGLMALLNGLLGLPQKKLVIKTLEDGAGKGSTKVNPWIDSMRASSPTRAKSTLLSSQNQDPNPWTLYHPSALNMFDQIIYDSRGKQVVTFLDYDGTLSPIVADPDKAYMSKKMRATLKDIARHFATAIVSGRSIDKVYSFVGLAELYYAGSHGMDIKGPTNKRSTKKGNEAVLLQPASEFLPMINEVYNILVEKTKSVPGAKVENNKFCLSVHYRCVDEKSWVALAEQVNLVLNEYPKLKLTQGRKVLEIRPNIKWDKGKALEFLLEKSLGYANSNNVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSKIPKETDASYTLQDPSEVGQFLRHLVEWKRTSSHHHKL* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0920 383 SUPERFAMILY HAD-like 127 374 IPR036412 -
Apr9g0920 383 CDD HAD_TPP 127 364 - -
Apr9g0920 383 Pfam Trehalose-phosphatase 127 361 IPR003337 GO:0003824|GO:0005992
Apr9g0920 383 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 127 335 IPR006379 -
Apr9g0920 383 Gene3D - 206 290 - -
Apr9g0920 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 3 383 - -
Apr9g0920 383 Gene3D - 127 357 IPR023214 -
Apr9g0920 383 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 3 383 IPR044651 GO:0004805|GO:0005992
Apr9g0920 383 TIGRFAM T6PP: trehalose-phosphatase 122 371 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0920 Apr-Chr9 17687584 17690252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0920 113 367 Trehalose Biosynthesis Gene Families AT1G23870 26.316 1.26e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0920 K01087 - gmx:100792915 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0920 9 17687584 17690252 Apr9g0920 9 17687584 17690252 ECH
Apr9g0920 9 17687584 17690252 Apr1g0107 1 1191572 1193621 PCT