Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0918 ATGGCAGCTGCAATGGATTTCTACAACAGTCCACAACTTCAGTCAGATCCTTTCAGAGGTGAGCTTATGGAAGTTCTAGAACCTTTTATGAAGAGTCCTTCCACAACTCCCTCTTCATCCTCATTCCCTTCTTCAAATTCTTCATACCTACCTTCTACTTCTCCATCTCCCTCTCTTTCTACTTCGTATTCTTACCCTTCTTACCCTTCATTCTTCAATTCCTCACCTACACAGCCCAATTTCTACGCAGACAGCTTTGAGCAACCGAGTTCTGTCCTTGGGCTCAACAACCTAAGCCCATCTCAGATTACCCAGATCCAGGCCCAGATGGAGGCCCAGATCCAGCAAAATAGCCCAACCAACCTCAGCTTCCTGAGCCCCAAACCTGTCCCCATGAAGCAAGTGGGTGCACCTCCCAAGCCCACCAAGCTATATAGAGGGGTAAGGCAAAGGCATTGGGGGAAATGGGTTGCTGAGATAAGACTCCCGAAAAACCGCACAAGGCTTTGGCTTGGAACCTTCGACACTGCTGAAGAAGCTGCTTTGGCTTATGACAAAGCCGCGTACAGACTCAGAGGTGACTTTGCAAGGCTCAACTTTCCCAACCTCAGGCACCAAGGTTTTGGGGAGTTTAAGACTTTGCAAACCTCGGTTGATGCTAAGCTTGATGCTATATGCCAAAACTTAGCTGAAATGCAGAAACAAGGGAAGCCAGAGAAGGGTGTGCGGTCAACCAAAAAGTCAACAAAGGTGAATTCGAAAGAGGTTCAGTTGGAGAAGGTTGAACCTTCAGCTTCAGCTTCTTTGTCTCCTGTGATGACTGAGAGTGAGGGTTCCGCTGGTTCTTCACCTCTTTCTGATCTTACCTTTGACGTCACTGAGCCACAATGGGAAGCTGCTTCTGAACCTTTTAACCTGCAGAAGTTCCCTTCTTATGAGATCGATTGGGATTCTCTGTGA 960 0.476 MAAAMDFYNSPQLQSDPFRGELMEVLEPFMKSPSTTPSSSSFPSSNSSYLPSTSPSPSLSTSYSYPSYPSFFNSSPTQPNFYADSFEQPSSVLGLNNLSPSQITQIQAQMEAQIQQNSPTNLSFLSPKPVPMKQVGAPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLRHQGFGEFKTLQTSVDAKLDAICQNLAEMQKQGKPEKGVRSTKKSTKVNSKEVQLEKVEPSASASLSPVMTESEGSAGSSPLSDLTFDVTEPQWEAASEPFNLQKFPSYEIDWDSL* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0918 319 MobiDBLite consensus disorder prediction 31 56 - -
Apr9g0918 319 Gene3D AP2/ERF domain 144 202 IPR036955 GO:0003700|GO:0006355
Apr9g0918 319 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 318 - -
Apr9g0918 319 MobiDBLite consensus disorder prediction 124 143 - -
Apr9g0918 319 SUPERFAMILY DNA-binding domain 144 202 IPR016177 GO:0003677
Apr9g0918 319 MobiDBLite consensus disorder prediction 233 288 - -
Apr9g0918 319 Pfam AP2 domain 145 193 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 MobiDBLite consensus disorder prediction 1 56 - -
Apr9g0918 319 ProSiteProfiles AP2/ERF domain profile. 144 201 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 PRINTS Ethylene responsive element binding protein signature 167 183 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 CDD AP2 143 203 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 MobiDBLite consensus disorder prediction 236 257 - -
Apr9g0918 319 SMART rav1_2 144 207 IPR001471 GO:0003700|GO:0006355
Apr9g0918 319 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 318 - -
Apr9g0918 319 MobiDBLite consensus disorder prediction 263 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0918 Apr-Chr9 17658680 17660607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0918 1 319 AP2-EREBP Transcription Factor Family AT1G78080 54.310 1.39e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr9g0918 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0918 K09286 - gmx:100781774 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0918 9 17658680 17660607 Apr9g0918 9 17658680 17660607 ECH
Apr9g0918 9 17658680 17660607 Apr1g0109 1 1210979 1212813 PCT