Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0915 ATGTCGAGGACGTTGGTGCAGCCGATAGGGCAAAAGAGGCTAACGAACGTAGCAGTGGTGCGTCTGAAGAAGCACGGAATGCGCTTCGAGATTGCTTGCTACCCTAACACCGTTCTTTCTTGGCGTTCCGGCGTGGAAAAGGACATCGATGAAGTGCTGCAGTCCCACACCGTTTACTCCAACGTCTCCAAAGGGGTTCTTGCCAAGTCCAAAGATTTAACCGCAGCTTTTGGCACCGATGACCACTCCAAAATATGCTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGTAAAGAGAGGGAATCGATTCTGTCGAATCAGTTTAGGGACATTGCGACCATAGTGATGCATAAGACTTACAATCCTGAGACTCAGCGCCCTTACACTATCAGCATGATCGAACGCCTCATGCGCGAAATCCATTTTGCCGTTGATCCTCACAGCAACTCCAAGAAACAGGCTTTGGAGTTAATTCAAGAGCTTCAAAAGCACTTCCCTATAAAACGGTGCCCGTTGAGAATACGAGCTGCTGCTCCCGAGGATCAAGTGCCCCAACTTTTAGAAAAGCTCAGTGTGTGGGATGCCACACTTATTTCCAAAGAAGGATCTTCTGCTCAGTTATCTGTGATTTTTGAATTGGAGCCTGGTCTATATAAGGATTGTCATGATTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTGGAGGGGGATACCCATGTGGAGCAATACAATGATATTGAGGATATGCCTGCATCATGGCCCAAAGAAACTCCTGATTCTGTGCATGAATTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGGCCTACTGATGGACAACAACAAAAGCAAAATAAGTGCAACACATGTAATGTTTCTTTTGAAGACTCCAAGCTGTATAGGGAACATCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACCGAGGAAGAGTGCATGGCAGACATGGGATTGGGCGACTCAAAATCTGATTTGAAGGATTATTCATTTTAA 1080 0.4472 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLTAAFGTDDHSKICLEILKKGELQVAGKERESILSNQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSNSKKQALELIQELQKHFPIKRCPLRIRAAAPEDQVPQLLEKLSVWDATLISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTHVEQYNDIEDMPASWPKETPDSVHELNEKLQKQTISSTSRPTDGQQQKQNKCNTCNVSFEDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMGLGDSKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0915 359 Gene3D Classic Zinc Finger 288 349 - -
Apr9g0915 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Apr9g0915 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Apr9g0915 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Apr9g0915 359 SUPERFAMILY beta-beta-alpha zinc fingers 291 346 IPR036236 -
Apr9g0915 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Apr9g0915 359 Gene3D - 1 96 IPR036786 -
Apr9g0915 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Apr9g0915 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Apr9g0915 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Apr9g0915 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Apr9g0915 359 Gene3D - 174 251 - -
Apr9g0915 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Apr9g0915 359 MobiDBLite consensus disorder prediction 278 298 - -
Apr9g0915 359 Gene3D - 100 172 IPR037188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0915 Apr-Chr9 17589654 17591909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0915 27 359 C2H2 Transcription Factor Family AT1G43860 59.130 2.79e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0915 SBDS_C 4.1e-26 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0915 K14574 - gmx:100797497 660.218