Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0906 ATGGGTCGTGTTAAACTTGAGATAAAGAAAATAGAGAACGTTACGAATCGACAAGTTACATTCTCAAAACGAAGAAATGGTCTCATCAAGAAAGCGTACGAGTTATCCGTCCTTTGTGATATTGAAATTGCCCTTATAATGTTTTCTCCGTCAGAACGTCTCAACCACTTTTCGAGTAGAAGGAGGATTGAGGATGTTTTTATTCGTTACATTAATCTTCCTGATCAAGAAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCTTATCGCAGGGGTATTCAAAATAAAGAGTATTTGCTAAGGACCCTTCAACAATTGAGGAGTGAAAATGACATAGCCCTTCGACTTGCCAATTCGGGAGACATTAACTTTGATATCGAGGAACTCCAACAAGAGGTTAATAGATTACAACAACAACTTCAAATGGCCGAGGATCAAATAAGAATTTATGAACCCGACCCATTAAAGATGACATCTATGGCAGAGCTTGAAACTAGTGAAAAGCACCTTGTAGATACCTTGACACGAGTTATACAAAGAAAGGAATATTTGTTGAGCAACCATTTATCTTCATATGATCCCTCTGGAATGCAGGGTATACCGACCTCTTTTGAGAATGTAAGTTGGTTGCAAGATGGGAGTCAAAACCATCCCCAAATTTTTGATGCATCTGCTCCTTTAGATCCTCTCAGGGACTTGTCTTCCACCGTGTATGGTTCATTTTCACAAGGAACAAGTTCAAATGTTGATCCACGAGGCATGGGAGAGTGTCATGTGACAAATCCAAGTGATGCGAACCTTCAAGCATGGCCTCAAGGATACACATTGTATCCTTCTATTCAGCATGACATGGTGGGACCTGACATGCCAGATATGATGCCACATGGACAAGTGAACATCCCAATCACAGCCTCTCATGTTGAACCACCTAAGAATGAACCTGCAGAATATGACCAGTGTAAACAACCTCATCATCATCAACTTAATGCTCAATAA 996 0.4026 MGRVKLEIKKIENVTNRQVTFSKRRNGLIKKAYELSVLCDIEIALIMFSPSERLNHFSSRRRIEDVFIRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALRLANSGDINFDIEELQQEVNRLQQQLQMAEDQIRIYEPDPLKMTSMAELETSEKHLVDTLTRVIQRKEYLLSNHLSSYDPSGMQGIPTSFENVSWLQDGSQNHPQIFDASAPLDPLRDLSSTVYGSFSQGTSSNVDPRGMGECHVTNPSDANLQAWPQGYTLYPSIQHDMVGPDMPDMMPHGQVNIPITASHVEPPKNEPAEYDQCKQPHHHQLNAQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0906 331 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Apr9g0906 331 Coils Coil 119 146 - -
Apr9g0906 331 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Apr9g0906 331 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 276 - -
Apr9g0906 331 MobiDBLite consensus disorder prediction 304 331 - -
Apr9g0906 331 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Apr9g0906 331 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 276 - -
Apr9g0906 331 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr9g0906 331 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0906 Apr-Chr9 17414966 17418829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0906 1 304 Type I MADS-box Gene Family AT1G22130 58.599 8.24e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr9g0906 SRF-TF 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0906 - - gmx:100305913 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0906 9 17414966 17418829 Apr9g0906 9 17414966 17418829 ECH