Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0893 ATGAGCTCTTCATCAACTCAACTAGTCCTCACGAAAGGGATGGGTATATACGATCCGTTCCATCAAGTGAGCATGTGGGGGGACAGCTTTAAAGTTGATGGCAGCCTCAATTCCATTGCTTCCCCAATGTTAATGATGAAGCCTAGAATGGAGAACAAGAATGAATGCACTCCTCATGAATCAATGGAAACTTCTGGAGATGATCAAGAGACTAATAGTAAGGTGCTAAGACGTCTAGCTCAAAATCGAGAGGCTGCTCGAAAATGTCGGCTGCGGAAGAAGGCTTACGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCGTGCAATTGGAGCTGGAGATTGAGAAAGCAAGGAAACAGGGTCTATGCATACGCAGTGCAACAGATTTCAGTTATATGGCACCATCTGCAACAATAAACTCAGGCATAACTATGTTTGAAATCGAATATGGACAATGGGTTGAAGAGCAAGATAGACAGAATGAAGAACTAAGAAATGCATTGCAAACTCATGCATCTGATTCTGAGCAGCTTCATCTACTTGTTGAGAGTAGCTTGAACCACTACTCAAATCTTTTCAGGATAAAAGCAGATGCTGCAAAGGCTGATGTCTTTTATATGATTTCCGGTGCATGGAAATCATCGGTGGAACGCCTTTTTCTTTGGATTGGAGGATCTCGACCATCACAGCTTCTAAATATCATTGTACCACAGCTTGAGCCTTTGACTGATCAACAACTTGTTAGCATTAACAATCTCCGGCTTTCATCTCAGCAAGCTGAAGATGCTCTCTCACTGGGATTGGAGAAACTTCAGCAGAGTCTGGTCCACAACATACCATCAGATCCATTTGTTGTAGGATACTACGAATTTGAGGTCGCTGCTGCCAAGGAAAAAGGGGAAGCACTAGAAGGTTTTGTAAACCAGGCTGATCACCTTAGGCAACAAACTCTGCTTCACATGTCTCGGATCCTGACAATTGGGCAAGCTGCTCAAGGCTTGCTGGCTATGGGAGAATACTTTCATCGCCTTCGCGCTCTCAGTTCTTTATGGACTGCTCGTTCATGTGATCCTGCTTACCCTACTCACCACTCCAATTGA 1101 0.4396 MSSSSTQLVLTKGMGIYDPFHQVSMWGDSFKVDGSLNSIASPMLMMKPRMENKNECTPHESMETSGDDQETNSKVLRRLAQNREAARKCRLRKKAYVQQLETSRVKLVQLELEIEKARKQGLCIRSATDFSYMAPSATINSGITMFEIEYGQWVEEQDRQNEELRNALQTHASDSEQLHLLVESSLNHYSNLFRIKADAAKADVFYMISGAWKSSVERLFLWIGGSRPSQLLNIIVPQLEPLTDQQLVSINNLRLSSQQAEDALSLGLEKLQQSLVHNIPSDPFVVGYYEFEVAAAKEKGEALEGFVNQADHLRQQTLLHMSRILTIGQAAQGLLAMGEYFHRLRALSSLWTARSCDPAYPTHHSN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0893 366 Coils Coil 154 174 - -
Apr9g0893 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 77 92 IPR004827 GO:0003700|GO:0006355
Apr9g0893 366 SUPERFAMILY Leucine zipper domain 76 107 IPR046347 GO:0003700|GO:0006355
Apr9g0893 366 Gene3D - 73 125 - -
Apr9g0893 366 SMART brlzneu 70 123 IPR004827 GO:0003700|GO:0006355
Apr9g0893 366 ProSiteProfiles DOG1 domain profile. 143 354 IPR025422 GO:0006351|GO:0043565
Apr9g0893 366 PANTHER TRANSCRIPTION FACTOR TGA9 14 358 - -
Apr9g0893 366 Coils Coil 93 120 - -
Apr9g0893 366 Pfam bZIP transcription factor 72 106 IPR004827 GO:0003700|GO:0006355
Apr9g0893 366 PANTHER FACTOR TGA7, PUTATIVE-RELATED 14 358 - -
Apr9g0893 366 Pfam Seed dormancy control 162 236 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0893 Apr-Chr9 17157586 17161182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0893 2 358 Calmodulin-binding Proteins AT1G77920 54.933 9.26e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr9g0893 DOG1 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0893 K14431 - gmx:100775882 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0893 9 17157586 17161182 Apr9g0893 9 17157586 17161182 ECH
Apr9g0893 9 17157586 17161182 Apr1g0127 1 1466830 1471337 PCT