Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0889 ATGCCTCCGCCGCACCCCCGCCGCGTCGACCAAAAACTGTGGCAGGCATGCGCCGGCGCCACCGTGAAAATCCCAGCGCTGCATTCTAGGGTTTACTACTTCCCCAGGGGTCAAATGGAACACGCCTCTCCCTCACGTAACCTCTCTCTCCCCCCTCTCATCCGTTCACTCCCCTTTGTTCCCTGCTACGTGTCCGCTCTCGATTACCTCGCCGATCCCCTCTCCGACGAGGTCTTCGCCAAGCTCCTTCTCACTCCCCTCACCCACACCCACAACCAAAACGACGTCGTTGTGTCCCCCCGATTCCTCACTCCCCTCTCCCACCTCCATTCGCCCAATGACGACGACAACCGCAACGCAGTCGTTTCGTTTTCCAAAATTCTCACTCCCTCCGACGCCAACAACGGTGGCGGTTTCTCCGTTCCGCGTTTCTGCGCCGATTCTATCTTCCCTCCGCTCAACTTCGACGATGATCCTCCCGTTCAGGTTCTCTCCGTCACCGACGTCCACGGCGTCACGTGGCAGTTTCGCCACATTTACCGTGGAACGCCGCGCCGGCACCTTCTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCTGGTGATTCCGTCGTCTTCGTGAAGGACTCTGACGGGAAGGTCTTTGTCGGGATTCGCCGCGCCCTGCGGTTCGCAAAGGGCGAGGTCGCCGAGGAGGAGATGCCTGCGAATGAGGGATTTTCGCGGAGTGCGAGGGGGAGGGTTTCTGCAAGGGCAGTTGCGGCGGTGGTGGAAGCGGCGGGGAGGAAGGTGCCGTTTGAGGTTGTGTATTATCCGAGAACTGGTTTGGCGGATTTTGTGGTGAAGGCAGAGATTGTGGAGGAAGCAATGAAGATCATGTGGGTTGGTGGAATGAGAGTGAAGATGGGTATGGAGACTGAGGATTCTTCTAGAATGACGTGGTTTCAGGGGACTGTATCTTCTGCCTCTGCTTCTGAAAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAGGTTTTGCAGAATGCAAAGCAGGTCAGTCCTTGGCAGGTTGAACTCGTTTCCCCGGTACCTACACTTCATACAGCATATCCCCCCGCAAAAAGGTTTAGAGCTGACCAGGGTTCTGGGCTGTTGAGTGGTAGAGAGGATAGAGAGGGAGATCCCTTCTTTCCTATGACAGGGTCTCCTAACTTAACAATTGGACACTTGAATAAAGAATTGTTGAGTTATGATACTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCTTCAAGTTTTTCCAACTTTTTAAATGATAACTCTTATCCACATATGGATAATTTTTCCTCTGGGAACAATAAACTGCCAAGGGCGGGAACTGTGTCAACAGAGCTGAACATTGGCAGTCCTCAATCTGATGACTTGTCTCCACATAGTCAGAGTAGTTTTCATTCCATTGACACACAGGTTGCTGGGACACACAACGGCAACTCCAAAGTTGGTTCTGGTTCAATTCAGCTATTTGGCTTGATGTCCAATGTCAACGACCCTCCCCAGTCGAGGCATGTTATTTGTGAAACTAGTTATGCAGATAAGAAGTTGTACAGGCACTCAAGGCTGGTAGGTAAACACGAAACTGTCAACTCTTGTCCTTGTAGTGGTAAAAGTATATTCCGGTTATCTTTTTTTGTTGGTCTGACTGCAACTTGA 1725 0.5223 MPPPHPRRVDQKLWQACAGATVKIPALHSRVYYFPRGQMEHASPSRNLSLPPLIRSLPFVPCYVSALDYLADPLSDEVFAKLLLTPLTHTHNQNDVVVSPRFLTPLSHLHSPNDDDNRNAVVSFSKILTPSDANNGGGFSVPRFCADSIFPPLNFDDDPPVQVLSVTDVHGVTWQFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFVKDSDGKVFVGIRRALRFAKGEVAEEEMPANEGFSRSARGRVSARAVAAVVEAAGRKVPFEVVYYPRTGLADFVVKAEIVEEAMKIMWVGGMRVKMGMETEDSSRMTWFQGTVSSASASENGPWRMLQVNWDEPEVLQNAKQVSPWQVELVSPVPTLHTAYPPAKRFRADQGSGLLSGREDREGDPFFPMTGSPNLTIGHLNKELLSYDTSPAGMQGARHDLFSASSFSNFLNDNSYPHMDNFSSGNNKLPRAGTVSTELNIGSPQSDDLSPHSQSSFHSIDTQVAGTHNGNSKVGSGSIQLFGLMSNVNDPPQSRHVICETSYADKKLYRHSRLVGKHETVNSCPCSGKSIFRLSFFVGLTAT* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0889 574 Gene3D - 121 226 IPR015300 -
Apr9g0889 574 SUPERFAMILY DNA-binding pseudobarrel domain 114 231 IPR015300 -
Apr9g0889 574 CDD B3_DNA 123 224 IPR003340 GO:0003677
Apr9g0889 574 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 540 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr9g0889 574 Pfam Auxin response factor 261 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr9g0889 574 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Apr9g0889 574 PANTHER AUXIN RESPONSE FACTOR 5 540 - -
Apr9g0889 574 SMART B3_2 124 226 IPR003340 GO:0003677
Apr9g0889 574 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Apr9g0889 574 Gene3D - 299 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0889 Apr-Chr9 17096510 17101150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0889 7 564 B3 DNA Binding Superfamily AT1G77850 45.591 8.26e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr9g0889 B3 2.8e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0889 - - gmx:100804933 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0889 9 17096510 17101150 Apr9g0889 9 17096510 17101150 ECH
Apr9g0889 9 17096510 17101150 Apr1g0134 1 1510200 1515520 PCT