Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0873 ATGGGGAAGGGTAAACCTAGGGCTGTGGAGAAAGGTGTGGTAGGGCCAAGTCCCAGCGTTACGCCGTGTGGATCGTCCACTATACCTACGGGGCCTGTCTATTACCCTACCGAGGATGAATTCAAGGATCCTTTGGAGTATATTTACAAGATTAGACCAGAGGCTGAGCCTTATGGAATTTGTAGGATTGTGCCTCCAAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTTGAATCTTTCACTTTTCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCACGCCCTGCTGCCTCTGATTCCAATACTTTTGACTTGGACTACTCTAGGTTTTTACGTGATCACTCTAGTAAGAAGTCCAGGAAAAGGGCTGTGTTTGAGGGCGAGGAGTTGGACTTGTGTAAGCTATTCAATGCTGTTAAGCGGTTTGGCGGATATGATAAGGTTGTTGATGGAAAGAAATGGGGGGATGTTGCTCGCTTTGTGAGGACAGGTGGGAAGATTTCAGACTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGTGACCGTTTGTATGATTATGAGAGTTTCTATAATCGCATGAATCAAGGGGCAACCCTGAATTGTAAGAAAGGTGGGCATGAGGACCGCAAAAGTGATCAAGCCAAGGGGCATCACAAGAATGTAGATTGTTTGAAACGTAAGGATTGTAAAGTGCAGGAAGAAGAACATGATCAAATTTGTGAGCAATGTAAAAGTGGTTTGCATGGGGATGTCATGCTTTTGTGTGATAGGTGCGACAAGGGCTGGCATATTTATTGTCTTTCCCCACCATTGAAACAAATTCCTCAGGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTTCCTGGGAAGCACTATTCATTGAAAGCTTTTAGACGCATAGCAGAGCAGTCAAGGAAGAAATGGTTTGGATCAGGACCAGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGATATTGTGGAGGGATTGATTGGTGAGGTTGAGGTTATGTATGGAAATGACTTGGATACGTCTGTCTATGGTAGTGGTTTCCCACGCGCATCTGTTCAGAGACCACAATCAATTGATGACAAATTATGGCAAGAATACTTGACTAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGTTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTGTTCTCGTCATTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAACTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGTGCATTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTGGTTACTATGTTGAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGGAATTTTGTTATCACCTTCCCCAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCTGACTGGCTACCACATGGTGCTTATGGAGCTGATCTCTATCAGCAGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTATCCCAGTATGGTGATGTTGATAGCAGAGCTTCTTATTATTTGAAGGAGGAATTGTTGAAAATATCAGATAAAGAAAAATCTTGGAGAGTGAAACTTTGGAAGAATGGTATTATTAAATCTTCTCGCATGGCTCCTCGAAAACGTCCTCAATATGTGGGAACTGAAGAAGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCAACTTTTGTTTGTTTGGAGCACTGGGAACACCTTTGCGAATGCAAAACTGTAAAATTATGTCTTCTCTATCGTCATTCACTTGCAGAATTGTATGACTTGGCATTTTCTATGGACAAATATGCTTCTGAGGAAAAAGTCGAGTGTAGAAGTGTGAAAAGGCAGTCTTCATGTCTTGGTGCTTTGACCAAAAAGGTGAAAGGTAGCACCATTTCTTTTGCTGAACTTGCTACAAAATGGCTTGTGCAATCTAGTATTATTCTTCAGAATGATTTTTTGAGTGATGCATTTGCTACTGCACTAAGGAAAGCTGAACAATTCCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGATATGGTAAAGAATTTGATTGAAGCTCAGAAGTGGGCTGAAGGGATAAGAGACTGCGTAAAAAAAATTGAGTTATGGTTGTGTCATCAGGACTCTGTCAAGGAAGTTCAATTAGAATTTGTTGATGAGTTACTGAAATTTAGTCCTGCACCATGCAATGAGCCTCATTTTCATAAATTGAAGGAATACGCAGAACAAGCAAGGTTGTTAATTCAGGAAATTGATACTGCTTTGTCAATGTGTTCAGAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACGTGAAAGAAAGCAAGAAATTAGAAGTGAAAATTTCTTCAACCAAGGCATGGCTGGATGGTGTCAAAAAGTGCATCTCAGCAAGACATCCTGCTGCACTAAATGTTGATGTTCTTTACAAATTAAAATCAGAGTTTGCGGATCTTAAAGTTCAACTCTTGGAGATAGACACACTTCAAAATCTATTAAGTCAAGCTGAATCTTGTATTGCTCAATGTCGTGATATGTTAGAAGGTCCTATGAAACTTGAGATTGTTGGTTTGCTGCTGAAGGAATGGGAGAATTTCACAGTTGATGTACCAGAGCTGAAGCTTTTAAGGCAATACCATTTAGATGCTGTTTCGTGGGTTTCCCACACTACAGATGTTTTAGGGAGAGTTCACATACTGGAAGATCAACATAATGCAGCTGTTCAATTGAAGAGCATTTTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGACGAGTTGGCATTAGTCGAGATTGAGCTGAAGAAGGCTAATTGCCGGGAAAAGGCTTTGAAGGCACATGATTCTAAGATGCCTCTGGAAATCATTCAGCAACTGTTGAAGGAGGCCACTATGCTACAAATTGAGGGAGAAAAACACTTTGTCAATTTATCTAGTGTGCTTGCTGTTGCCATGCCTTGGGAGGAAAGGGCTAGAGAGATACTTTCACATGAAGCTCCTATATCTGACTTTGAGGATATGATCAGAGCTTCAGAAAACATATTTGTTATTCTTCCTTCACTCAATGGTGTTAAGACTGCACTATCAGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTGCTACTCATGTTTCAAATTCTGTTTGGAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCAAAGCATCTTAAAGTATCTTTGGAAGAAAGAAGGATGCTTGAATTAGTTTTTAAGAACTGCAAAATATGGGAGTGTGAAGCATGTTCTCTACTGGACGATGCTCGGTGCTTATTTGAATTGGATAACTCTCTCCATGAAAGAAGTAGTGGTTTAATGCATAAAGTGGAAGATTTGATTGTAAGAATCAAATCTGCCATTACATCTGGTGTATCACTTGGTTTTGACTTCAATGAGATTTCAAAACTTGAAACATCTTGTTCTACACTTCAATGGTGCAAAAGAGCCTTATCTTTCAGCAATTACTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCTTTTGTTTCTGGTGCTCTGTTGAAAGCTTTGATTGATGCCGTTGAATGGCTTAGGAGAGCATTGGAGGGGATTTCTGGACCTCGCAATTCTAGAAGATGCAATTTGACTGATGTTCAAGATATTCTTACCAATTATCAGACTATTAAAATGACCTTTACAGCAGTTAATTGTCAACTTGAAGAAGCCATTGGAAAACATAAGTTGTGGCAAGAGCGAGTCCATCAATTTTTTTGTCTAAGTTCTAGGGAACGCTCTTGGTCATCAATATTGCAGCTCAAGGAACTTGGAGATACTGTTGCCTTTAGTTGTTCAGAACTGGATTTGATTTTATCTGAAGTTGATAAGGTGGAAAATTGGAAGAAAAGATGCATGGATAAAATAGGAACTGTAGTCCAAAGTGGGAATTCGCTGCTTCATGCACTGGAGAAGATAAAACAGACTCTAGATAGATCGTTGTTCATATATGGCAAGTTGGAAGATCTGGAGGGACAAAATCCATGCATCTGTTGCTTTGATGATTCTGAAGATCTGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATTTACAGTGCATTGGACTAACAGGAAAAGTCAGAGGCATTGAAAACTACAAGTGCCATTATTGTGAAATGTTGAAGGATGAATCCCATTATCAGAATGGAGGTGCCTGCCTGACATTTGGAAAGAAGCGTATTGAATTGAAAATTCTTGCTGAACTCATGGCTGATGCTGAACATTTCTGTTTATGGATTGATGAAAGAGATGTTTTGAGCCAACTTGTTGAGAAAGCCCTTTCATGTAAGTCTTGCTTAAGAGAGATAGTGACCCACGCATCAGCTGATGTTTATGAAGATATTAGTGCCATCTCTGAAAAGTTAGCCACTGCCCTAAAGGCTAGCAAAGTGGCTGTTGTCTACGATCAGCATGATAATTGTGATCTTGAGCTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGCCAATAGATTGTTAAATGGTGTGCAAAAGCCCTCTGTCAAACTGATTCAGAAGCATCTGAAGGAGGGAGTTGCTGCGGACATATCACCTGAAGATCACTATATGTTGAAACTTACAAATGTGAATTGCTTGGGTTTGCAGTGGGTAGAATTAGCCAACAAGGTGGCAATTGATTTTGGGGCACTCGACCTAGATAAAGTTTTTGAACTTGTAGCAGAAGGTGAAAACTTGCCTGTTGATGTAACTGAGGAACTCAGGATATTAAGAGCTAGATGCATGCTTTATTGCATTTGTCGAAAGCCGTTTGATCCACAAAGGATGATTGCCTGTTATCATTGTAATGAGTGGTATCACTTCGATTGCATGAAATTGCCATGCACAAGAGAGGTCTACATTTGTCCTGCATGTAACCCTTGTACAGAAGGATTGCCTACAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCGTCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCACTTGCAACATGTTTGCAACGAGGAATCAAGATAGTTGTAATGGGATAGAATCCCTAAGGTGGCAAAGTCGAAAGCCTTTCAGAAGAGCAGCTAGGAAACGTGTTGAGCTTCGAAGTCTTTCTCCATTTCTATGCATACAACGATAA 5475 0.4062 MGKGKPRAVEKGVVGPSPSVTPCGSSTIPTGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICRIVPPKSWKPPFALDLESFTFPTKTQAIHKLQARPAASDSNTFDLDYSRFLRDHSSKKSRKRAVFEGEELDLCKLFNAVKRFGGYDKVVDGKKWGDVARFVRTGGKISDCAKHVLCQLYRDRLYDYESFYNRMNQGATLNCKKGGHEDRKSDQAKGHHKNVDCLKRKDCKVQEEEHDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPQGNWYCFNCLNSDRDSFGFVPGKHYSLKAFRRIAEQSRKKWFGSGPVSRVQIEKKFWDIVEGLIGEVEVMYGNDLDTSVYGSGFPRASVQRPQSIDDKLWQEYLTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAYGADLYQQYHKTAVLSHEELLCVVSQYGDVDSRASYYLKEELLKISDKEKSWRVKLWKNGIIKSSRMAPRKRPQYVGTEEDPACIICQQYLYLSAVVCGCRPSTFVCLEHWEHLCECKTVKLCLLYRHSLAELYDLAFSMDKYASEEKVECRSVKRQSSCLGALTKKVKGSTISFAELATKWLVQSSIILQNDFLSDAFATALRKAEQFLWAGSEMDSVRDMVKNLIEAQKWAEGIRDCVKKIELWLCHQDSVKEVQLEFVDELLKFSPAPCNEPHFHKLKEYAEQARLLIQEIDTALSMCSEMSELELLYSRACGLPIYVKESKKLEVKISSTKAWLDGVKKCISARHPAALNVDVLYKLKSEFADLKVQLLEIDTLQNLLSQAESCIAQCRDMLEGPMKLEIVGLLLKEWENFTVDVPELKLLRQYHLDAVSWVSHTTDVLGRVHILEDQHNAAVQLKSIFEEGLSLKIQVDELALVEIELKKANCREKALKAHDSKMPLEIIQQLLKEATMLQIEGEKHFVNLSSVLAVAMPWEERAREILSHEAPISDFEDMIRASENIFVILPSLNGVKTALSEANSWLRNSKPYLVSATHVSNSVWKVEDLQMLVSQSKHLKVSLEERRMLELVFKNCKIWECEACSLLDDARCLFELDNSLHERSSGLMHKVEDLIVRIKSAITSGVSLGFDFNEISKLETSCSTLQWCKRALSFSNYSPSLEDVLEVAEGLSHSFVSGALLKALIDAVEWLRRALEGISGPRNSRRCNLTDVQDILTNYQTIKMTFTAVNCQLEEAIGKHKLWQERVHQFFCLSSRERSWSSILQLKELGDTVAFSCSELDLILSEVDKVENWKKRCMDKIGTVVQSGNSLLHALEKIKQTLDRSLFIYGKLEDLEGQNPCICCFDDSEDLEFLTCSTCMDCYHLQCIGLTGKVRGIENYKCHYCEMLKDESHYQNGGACLTFGKKRIELKILAELMADAEHFCLWIDERDVLSQLVEKALSCKSCLREIVTHASADVYEDISAISEKLATALKASKVAVVYDQHDNCDLELALAKNLWKIQANRLLNGVQKPSVKLIQKHLKEGVAADISPEDHYMLKLTNVNCLGLQWVELANKVAIDFGALDLDKVFELVAEGENLPVDVTEELRILRARCMLYCICRKPFDPQRMIACYHCNEWYHFDCMKLPCTREVYICPACNPCTEGLPTNHDRLTSGKFEEPKTPSPRHTNPRKKQKRDVPSLTCNMFATRNQDSCNGIESLRWQSRKPFRRAARKRVELRSLSPFLCIQR* 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0873 1824 SUPERFAMILY ARID-like 81 202 IPR036431 GO:0003677
Apr9g0873 1824 SUPERFAMILY FYVE/PHD zinc finger 1432 1481 IPR011011 -
Apr9g0873 1824 Gene3D Cupin 256 550 - -
Apr9g0873 1824 SUPERFAMILY Clavaminate synthase-like 373 558 - -
Apr9g0873 1824 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Apr9g0873 1824 Pfam jmjN domain 32 65 IPR003349 -
Apr9g0873 1824 Pfam PHD-finger 240 287 IPR019787 -
Apr9g0873 1824 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Apr9g0873 1824 Pfam ARID/BRIGHT DNA binding domain 107 188 IPR001606 GO:0003677
Apr9g0873 1824 SMART cupin_9 378 544 IPR003347 -
Apr9g0873 1824 SUPERFAMILY FYVE/PHD zinc finger 1688 1740 IPR011011 -
Apr9g0873 1824 MobiDBLite consensus disorder prediction 1 22 - -
Apr9g0873 1824 CDD PHD_RSF1 241 285 - -
Apr9g0873 1824 SMART PHD_3 1692 1734 IPR001965 -
Apr9g0873 1824 SMART PHD_3 1435 1481 IPR001965 -
Apr9g0873 1824 SMART PHD_3 240 286 IPR001965 -
Apr9g0873 1824 SUPERFAMILY FYVE/PHD zinc finger 233 288 IPR011011 -
Apr9g0873 1824 ProSitePatterns Zinc finger PHD-type signature. 241 285 IPR019786 -
Apr9g0873 1824 SMART bright_3 99 193 IPR001606 GO:0003677
Apr9g0873 1824 Pfam JmjC domain, hydroxylase 411 527 IPR003347 -
Apr9g0873 1824 ProSiteProfiles JmjC domain profile. 378 544 IPR003347 -
Apr9g0873 1824 Pfam C5HC2 zinc finger 621 672 IPR004198 -
Apr9g0873 1824 ProSitePatterns Zinc finger PHD-type signature. 1693 1733 IPR019786 -
Apr9g0873 1824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1679 1735 IPR013083 -
Apr9g0873 1824 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 29 1005 - -
Apr9g0873 1824 SMART JmjN_1 30 71 IPR003349 -
Apr9g0873 1824 MobiDBLite consensus disorder prediction 1747 1761 - -
Apr9g0873 1824 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 1005 - -
Apr9g0873 1824 Gene3D Cupin 18 134 - -
Apr9g0873 1824 MobiDBLite consensus disorder prediction 1747 1773 - -
Apr9g0873 1824 SMART ARID_2 95 188 - -
Apr9g0873 1824 ProSiteProfiles Zinc finger PHD-type profile. 238 288 IPR019787 -
Apr9g0873 1824 CDD ARID 100 188 - -
Apr9g0873 1824 Pfam PLU-1-like protein 1140 1391 IPR013637 -
Apr9g0873 1824 Pfam PLU-1-like protein 990 1174 IPR013637 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0873 Apr-Chr9 16770946 16790430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0873 40 95 JUMONJI Transcription Factor Family AT4G20400 53.333 1.21e-10 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr9g0873 PLU-1 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0873 K11446 - gmx:100789512 3181.35