Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0865 ATGGATGACCCTCACCTCCTCGACTTCTCCGATTACAGCATCACAACCACCCCTTTCTCAGACGATGAGTGGAACCTCTTCTCCCCACTTGTCGATTGGGACTCCTTCACCACCCTCATGGACGACACTGTCGTTTCCACTCCAGATCAACTCACCCTCGACCAAGAATCAAGCGTTGTCGTTTGCGACGACCAAAAGGGCCTGCGCCTGGTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCACCACCGGCACCCAGAGCCACCACCTGGCTCGAGCGATATTGGTTCGGCTCAATGACTTGGTCACCCCCAATAGCGGCACCAATAGCGGCACCAACATGGAGAGGCTCGCCGCGTATTTTACCCTCGCCCTCCACTGTCTGCTAGATGGCGCCGCTGGTGCGCACAGTGTAGATCACCTCCACCTAACGGACACACTCACCGCTTTCCAACTTCTTCAAGACATGTCCCCTTACGTCAACTTCGCCCACTTCACCTCCAACCAGGCCATCTTGGAAGCTGTGGCCCACGAAAGACGGGTCCACATCATCGACTATGATGTAATGGAAGGGGCCCAATGGGCCTCGCTCATTCAGGCTCTTTCGTCTAAAAAAGATGGCCCACCTGGCCCGCACCTCCGCATCACCGCACTCTCCAGAACCGGTGTGAATGGACGGAAAGTTTCGTCCATCGGCACCGTTCAGGATACCGGACGGAGGTTAACGGCGTTTGCGGCTTCCGTTGGGCAACCGTTTTCGTTTCACACGTGTAGATTGGACCCCGACGAAAAGTTTCGGGCTTCTTCTCTGAAGCTGGTTCGTGGAGAGGTGTTGGTGTTTAACTGTATGATGCATTTGCCTCATCTTAGTTACCGGGCTGGCGATTCCGTAGCTTCGTTTTTGAAGGGGGCAAAGGAGTTATGCCCGAGGGTTGTGACCCTGGTGGAGGAGGAGGTGGAGCCCGTTGGGGATACGGGCTTTGTGGGCCTGTTCATGGACTCGCTCCACCACTATTCAGCGGTGTTTGATTCGCTTGAGGTGGGGTTTCCGATGCAGAGATGGGCGGGGGCTTTGGTAGAGCGAGTGTTCTTGGGCCCGAGAATAAGGGGGTCGGTGGGGCGGATGTACAGGAGTGGAGAGGAGGAGAGAGGGTCGTGGGTGGAGTGGTTGGGTGCGGTGGGGTTCAGGGGAGTTCCCATAAGCTTCGCTAATCATTGCCAAGCGAATCTCTTGTTGGGATTGTTCAACGATGGTTATAGGGTGGAAAAGATGAGGAACAACAAGTTGGTGTTGGGATGGAAATCAAGGCGTTTGCTTTCTGCCTCTGTTTGGATTTCCCCCTCTTGA 1347 0.5575 MDDPHLLDFSDYSITTTPFSDDEWNLFSPLVDWDSFTTLMDDTVVSTPDQLTLDQESSVVVCDDQKGLRLVHLLMAAAEALTTGTQSHHLARAILVRLNDLVTPNSGTNSGTNMERLAAYFTLALHCLLDGAAGAHSVDHLHLTDTLTAFQLLQDMSPYVNFAHFTSNQAILEAVAHERRVHIIDYDVMEGAQWASLIQALSSKKDGPPGPHLRITALSRTGVNGRKVSSIGTVQDTGRRLTAFAASVGQPFSFHTCRLDPDEKFRASSLKLVRGEVLVFNCMMHLPHLSYRAGDSVASFLKGAKELCPRVVTLVEEEVEPVGDTGFVGLFMDSLHHYSAVFDSLEVGFPMQRWAGALVERVFLGPRIRGSVGRMYRSGEEERGSWVEWLGAVGFRGVPISFANHCQANLLLGLFNDGYRVEKMRNNKLVLGWKSRRLLSASVWISPS* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0865 448 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 445 IPR005202 -
Apr9g0865 448 Pfam GRAS domain family 70 444 IPR005202 -
Apr9g0865 448 PANTHER SCARECROW-LIKE PROTEIN 26 44 445 IPR030028 -
Apr9g0865 448 ProSiteProfiles GRAS family profile. 61 445 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0865 Apr-Chr9 16620383 16621729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0865 64 444 GRAS Transcription Factor Family AT3G54220 35.969 8.51e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr9g0865 GRAS 4e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0865 - - pvu:PHAVU_008G165200g 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0865 9 16620383 16621729 Apr9g0865 9 16620383 16621729 ECH