Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0862 ATGCCAGTGAACCGTGGCCAAGGCCAAACCACAAGGTGGTATCAACTATGCTTTGTTCCCACTAGTGCAGATAGTTCAGATGATTCAGACACACAATCTGTAATCTTTGATTCTAGTACTCCAACTAGTACATGGCAACAACTTTCTTTTTCTCCACCAGAATCGCCAACGCCGCCGCACCCGCCAAACCCAGAACCCGAAATAGACTGGCGTTTCCCACCACCACCACCGCCACCATTTCAAGATTGGGCTGACATTGTATTTCAACATGGTAGACATCAACAACCTCAAAGTCACAAACATGTTGATGTCATGAATGGCATTAGCCGTGTGAGAATATCAGAGTTGCATGATAACTCTCACTGTCCCATTTGCATGGAGGAGTTCAAAGGGGGTGACCGAGTTGGCCGGTTACCCTGCAACCATACCTACCACTCTGAGTGCATTACTCGTTGGCTTAACTACTACAAAGAAACGTGCCCTGTTTGCAGGCTTCAGGTAAATGGTTGGGAAGGTCAGAGTGGTACTTTTAGCATAGTGGATCATAGTTTGGACCCAGAACCTGAAATCCCAAACGTGACAGATAGTAGTGCAAGTGATAACTCGGATGATGATTATGATAGTGCATATGATGATGAGTTTGGTGATTCTCATGAAGATGGAAACGTAGTTGGTAGTGCTTCTTAG 687 0.4556 MPVNRGQGQTTRWYQLCFVPTSADSSDDSDTQSVIFDSSTPTSTWQQLSFSPPESPTPPHPPNPEPEIDWRFPPPPPPPFQDWADIVFQHGRHQQPQSHKHVDVMNGISRVRISELHDNSHCPICMEEFKGGDRVGRLPCNHTYHSECITRWLNYYKETCPVCRLQVNGWEGQSGTFSIVDHSLDPEPEIPNVTDSSASDNSDDDYDSAYDDEFGDSHEDGNVVGSAS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0862 228 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 100 176 - -
Apr9g0862 228 SMART ring_2 122 163 IPR001841 -
Apr9g0862 228 MobiDBLite consensus disorder prediction 52 76 - -
Apr9g0862 228 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Apr9g0862 228 MobiDBLite consensus disorder prediction 181 228 - -
Apr9g0862 228 Pfam Ring finger domain 121 164 IPR001841 -
Apr9g0862 228 MobiDBLite consensus disorder prediction 21 76 - -
Apr9g0862 228 MobiDBLite consensus disorder prediction 21 51 - -
Apr9g0862 228 MobiDBLite consensus disorder prediction 200 214 - -
Apr9g0862 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 169 IPR013083 -
Apr9g0862 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 176 - -
Apr9g0862 228 SUPERFAMILY RING/U-box 116 168 - -
Apr9g0862 228 CDD RING-H2_PA-TM-RING 121 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0862 Apr-Chr9 16536509 16537195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0862 77 175 C3H Transcription Factor Family AT5G41450 36.792 5.87e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0862 K11982 K15692 ccaj:109817940 169.088