LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr9g0843	ATGACTCATAATCACATCACCACCGATTCCCCTCTCTCTCGTCGCATTGTTCGTGCCTTCCTCCAATTCCTCAACTCTGTTGAACCCAGCCCAGGGGTTGATGCTGAGGGGATTGAGGTTGCAAGGGAGTGTTTGGTGGAGGCTTTTAGGCTTAATTCATCTCCTGTGAATGGTGATCCTGTGAAACCTGATTCACTGATTGACATTTTCAAGTCTCTTGAAGCTAACAAGCAATGTGAAACGAGTAAGTCAGATATTGGTCCTCAACCTGATTCTGTGGCCACTTCCAGTTCATTGTCTGGCGAGAATCCTGCTCATGCAGAAAATCATTCTCAGGCATCGAAATCTATGGATGAAGATTGGACACAGGACTCGCATGCTTTTGTATCTAAAGATGAACTCTGTGGACAATTCTTTGCTGCTCTGGAGAAAAATCACTATTGTGGGACCAATACTGATGGGAGTGATGATCCAGTGCAACTGGAGAAAGCATGTCGTTTATTCGATGAGGCTTTTATGGAGATGGAAAGGTCTGGGTGTCATCAGTTTAGTTTGAAGAATTTGGCTGAATCACTGAAATCACTAGGTAACAAGGCAATGCAAGCTAAGCAATACTCTGATGCAATAGATTTGTATGATTATGCTATTGCACTCCATGAAAAGAGTGCTGTTTACTATTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATACGGAAGCAATCCAAGATTGCCTTAGATCAATTGAGATTGATCCAAACTACAGCAAAGCATACAGTCGATTGGGTTTAGCTTATTATGCTCAAGGAAATTACAGAGATGCTATTGAGAAAGGGTTTATAAAAGCCTTGCAGTTGGATCCAAATAACGAGTCTGTCAAAGAAAATATTCTGGTAGCTGAGCGTAAATTGTTAGAAGAGCAACATCATGCAGATCACAATCAGAGTTCAAGATCATCTCAGGAGTTCCAAAACCAATCTGCACGAGGATCAAGAAGCCATGCAGTGCCGCCTCCATTTTCCTCAATGCCGTTTAACCCCAACGATCTTGCAAGCATGTTCATGAACATAGCCGCAAATGCTACAAATGTGCATCAGGGGTCACATACTCAGGAAAGGCAAGAAGATAGCAACAGTAGTGGAGCTAATGAACCCGAAATAAGAATTGGGGGAAATATTAGTGTAAACTTTGACCAAATGCCTGAGGATATAACAGGAGCGTTTCAATCTATGATGGAAATGTTATCTGGGGCTGTACCCCCCGGCCAACCACATGATCAAATGAATGGAAGAACACCTCCAAACTAG	1311	0.4264	MTHNHITTDSPLSRRIVRAFLQFLNSVEPSPGVDAEGIEVARECLVEAFRLNSSPVNGDPVKPDSLIDIFKSLEANKQCETSKSDIGPQPDSVATSSSLSGENPAHAENHSQASKSMDEDWTQDSHAFVSKDELCGQFFAALEKNHYCGTNTDGSDDPVQLEKACRLFDEAFMEMERSGCHQFSLKNLAESLKSLGNKAMQAKQYSDAIDLYDYAIALHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIEKGFIKALQLDPNNESVKENILVAERKLLEEQHHADHNQSSRSSQEFQNQSARGSRSHAVPPPFSSMPFNPNDLASMFMNIAANATNVHQGSHTQERQEDSNSSGANEPEIRIGGNISVNFDQMPEDITGAFQSMMEMLSGAVPPGQPHDQMNGRTPPN*	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr9g0843	436	SMART	tpr_5	223	256	IPR019734	GO:0005515
	Apr9g0843	436	SMART	tpr_5	257	291	IPR019734	GO:0005515
	Apr9g0843	436	SMART	tpr_5	189	222	IPR019734	GO:0005515
	Apr9g0843	436	Gene3D	Immunoglobulin FC, subunit C	2	77	-	-
	Apr9g0843	436	ProSiteProfiles	TPR repeat profile.	223	256	IPR019734	GO:0005515
	Apr9g0843	436	Pfam	TPR repeat	232	271	-	-
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	365	386	-	-
	Apr9g0843	436	PANTHER	LD24721P	9	433	-	-
	Apr9g0843	436	SUPERFAMILY	TPR-like	188	300	IPR011990	GO:0005515
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	79	122	-	-
	Apr9g0843	436	Gene3D	Tetratricopeptide repeat domain	184	338	IPR011990	GO:0005515
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	417	436	-	-
	Apr9g0843	436	PANTHER	LD24721P	9	433	-	-
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	79	111	-	-
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	309	345	-	-
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	365	392	-	-
	Apr9g0843	436	ProSiteProfiles	TPR repeat profile.	257	291	IPR019734	GO:0005515
	Apr9g0843	436	MobiDBLite	consensus disorder prediction	318	333	-	-
	Apr9g0843	436	ProSiteProfiles	TPR repeat profile.	189	222	IPR019734	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr9g0843	Apr-Chr9	16104513	16116135	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr9g0843	188	287	U-box Gene Family	AT3G07370	33.000	1.76e-09	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr9g0843	K16365		-	gmx:100799770	701.434