Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0828 ATGGAAAGCCACATACCAAGAGTCAAAGACGCTTGCGCGGCGTGCAGATTTCAACGCAGAAGGTGTGGCACTCACTGCATTCTCTCAAGTTATTTTCCTAACGATCGTCAGGACCAATTTATCAACGCACACAGATTATTTGGTGTTGGTAGAATCACCAATATGTTGAAGACTCTTGATCCTCAAAATAGAGATGCAGCTGCGAGCGCCATTATTTACGAATCTGACATGCGCGCCATAGATCCTGTTGGCGGTTGTCACAGAGTAATTCAACAGTTGCAGTCACAGATTGAGTCCACCGAAGCCGAACTTCACCTTGTTCGTCAAAATCTTGCTTTTTTCAAGGCTCAGGGTAGCTCTGGTAACATCATCAATGCCGCCCCTCAACCTAATCTTGAATCAATGCCACAAGAACTACAACAACAACAACACGTCAGTTATAATCCTTCACAAGAAGACATCAACATGTGGGCTTTACTGAACTCCATTCCTTTGTCCCATTTGTCTTTAGAGGATAACCAAGAATCTGTTGTCGACTCTTGGCACGATGATCAAGAGCCTGCTCTTGACTCCATGAACGAAATGAATTCGGATGCTGGATCTCATCATCAGGCTAACCAAAAGGAAAACTAA 633 0.4408 MESHIPRVKDACAACRFQRRRCGTHCILSSYFPNDRQDQFINAHRLFGVGRITNMLKTLDPQNRDAAASAIIYESDMRAIDPVGGCHRVIQQLQSQIESTEAELHLVRQNLAFFKAQGSSGNIINAAPQPNLESMPQELQQQQHVSYNPSQEDINMWALLNSIPLSHLSLEDNQESVVDSWHDDQEPALDSMNEMNSDAGSHHQANQKEN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0828 210 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Apr9g0828 210 Coils Coil 90 117 - -
Apr9g0828 210 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Apr9g0828 210 MobiDBLite consensus disorder prediction 176 210 - -
Apr9g0828 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 199 - -
Apr9g0828 210 PANTHER LOB DOMAIN PROTEIN 9 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0828 Apr-Chr9 15895335 15895967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0828 11 115 AS2 family AT3G13850 54.286 3.44e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr9g0828 LOB 2.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0828 - - ccaj:114916407 219.164