Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0812 ATGTCAAAGTCTCCCTCTCATGAACAACGGCAGTCCATTTATAATGCTTCTCAGCCTGGGGAATTTAATGAGACAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTGCATGCCAACTTATCATCACCACTTGAGAAAGAACTTATTACAGCACGCTTGCTGGATGTTGCCAGGAGAAGAAAGGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTCCTGCAAAAGTTAACGTTGCTTCCACTCTCAGTGTCCTTTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCGCTTTTAAATTATGAATCCACCAATGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTTTCTGATGATCATGTAGGTATGAAAATTTTTGTTACAGAAGGTGTCGTTCCAACCTTATGGAATCAACTAAATCCAAAGAAAAAGGAAGACAAAATTGTGGAGGGTTTTATTACTGGAGCATTAAGAAATCTATGTGGTGACAAAGATGGCTACTGGAAAGCAACTTTAGAAGCTGGAGGTGTGGATATTATTGTGGGGCTCTTATCTTCTGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCACGTTTAATGCTGGCTTTTAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGCCTTACTTCAACTTGTTGGTCGGGAAAATGACATTTCTGTTCGAGCTAGTGCTGCTGATGCCCTAGAGGCTCTCTCCTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTTAATGCAGATGGTATTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAATGAGTGTATGCAAGGTGATGGCGGCCAAGCTCTACAGGAGCATTCAACTCGAGCTTTAGCCAACATCTGTGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAACTTTCACATTCTTCTCGCCTTGCTGCACCAGTTGGTGATATAATTGGTGCCCTTGCTTATACACTCATGGTCTTTGAGGAAAAAGTTGATGTTGATGAGAAACAATTTGATGCAACTCAGATAGAGGATATTCTAGTAACTCTTTTAAAGCCCCAGTGCAGCAAACTGATTCAAGAGCGTGTCCTTGAGGCTATGGCTAGCCTATATGGAAATGTCTGTCTGTCCAAGTGGCTCATTCAGGCAGATTCAAAGAAGGTTCTTATTGGACTGATAACCATGGCTGCTGCTGATGTGCAAGAGTATCTAATACTTTCATTGACCAGCTTGTGTTGTGATAGGATTGGAGTATGGGAGGCCATAAAAAAAAGAGAAGGTGTCCAATTACTGATATCATTGCTGGGATTGTCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTGAGCAGGTTGATGACAGCAAGTGGGCAATCACTGCTGCTGGAGGAATTCCACCATTGGTGCAGTTGTTGGAGACAGGATCGCAGAAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATCCGTGCTTGTGTTGAAAGTGCTGGAGCCATCCCGGCATTTTTGTGGCTTCTTAAGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCCATGGCACTCACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGTTATTGGCATTGCTCCGAGGGGATTGTCCAAGTTCAAAGGCCCACATAATCCAAGTTTTAGGTCATGTTCTTACTATGGCAACATTGAATGATCTCCTTGAAAAGGGTTCTGCAGCTAATAAAGGCCTGAGATCTCTTGTACAGGTCCTCAATTCATCAAATGAGGAAACCCAAGAATATGCTGCTTCAGTTCTAGCTGATTTATTTGTCACGAGACAAGACATTTGCGATAGTCTTGCAACTGATGAGATTGTGCTTCCTTGCATGAAACTTTTGACTAGCAAAACTCAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGTCCCGTCCAACAAAGAGCAAAGCTGCAAATAAGATGTCTTATATTGTAGAGGGTGATGTCGAGCCACTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCGTTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTTGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCGTGCACTTCATCAATTATTGAAGCATTTTCCAGTAGGTGACGTTCTCAAGGGGAATGCTCAATGTCGTTTCACTGTGCTTGCACTTGTTGATTCCTTAAGAACTGTGGATATGGATGGAACTGATGCTGCAGATGCTTTAGAAGTAATATCACTGCTAGCCAGGACTAAACAAGGTGTCAACTTCACTTACCCTCCATGGTCAGCTCTGTCTGAAATACCATCAAGCTTAGAACTTCTTGTCTGCTGCCTTGCTGAGGGGCCTTCCTCTGTGCAAGACAAGGCAATTAAAATTTTATCTAGACTTTGTGGGGATCAGCCAGTTGTTCTTGGTGAATTGTTGTCTGCTAGTTCCAAATCCATTGGTTCTTTGGTTAATAGAATAATGAATTCCTCCAGTTTAGAAGTAAAAGTTGGGGGGGCTGCCCTACTAATTTGTGCTGCAAAGGAGATGAGAGATCTTTCAATGGATTCACTTGATGCTTCTGGGTATCTAAAACCATTAATATATTCTTTAGTTGATATGATAAAGCAGAGTTGTGGCTATTCTTCATTAGATATTGAAGTTTGCACTCCTAGAGGTTTTATGGAGAGAAATGGCTTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCAGCCATTGTCTTGGGAAGCACTATTGCCATGTGGTTGCTCTCAGTTATTGCTTCTTTCCATATAAAGAGCAAGCTCACAATTATGGAAGCCGGTGGACTTGAAGCTCTCTCTGACAAACTTGTGAGACATACTTCAAATCCACAGGCTGAATACGAGGATACGGAAGGAATATGGATCAGTGGCTTGCTCTTGGCCATTTTATTTCAAGATGAAAATGTCGCTCTATCTCCTGTCACAATGCGCGTTATACCTTCGATCACACTTCTGCTAAGATCCGAAGAAGTAATTGATAAATATTTTGCTGCCCAGGCTATGGCTAGTCTTGTTTGTAACGGTAATAAGGGAATAGATCTTGCCATTGCAAATTCTGGTGCTGTAGCTGGATTGATAACTATTATTGGGCATATAGATTCAGATATGCCAAATCTCATGGCTTTATCAGAAGAATTTTCTTTAGTACGAAACCCTGACCAAGTTGTTTTGGATCACCTTTTTGAAATCGAAGATGTAAGAGTGGGATCTACTGCCCGGAAATCCATACCCCTCTTAGTGGATCTCCTCAGACCAATACCAGAAAGGCCTAGTGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGACGGAAGTGATACCAATAAATTGATCCTAGCTGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTCTCCTTGAGTCCTCAAGACTCAACTGAGGCTGCTATTTCTGAGTTGTTGAGAATATTATTTTGCAATTCTGAACTTGTTAAACATGAAGCATCAACAAGTTCAATGAACCAACTCATAGCTGTTTTGCGCCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTAATGAACTTTTTGATGCTGACAATATTAGAGACTCGGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAACACAACATTGGGGAGCGAGCAAGAGGCTGCTCTCATGGCCTTGATCAAGTTAACTTCAGGAAATTCTTCAAAAGTATCTCTTTTTACTGATGTGGAAGGAAACCCACTTAAAAGTTTGTTCAAAATATTGTCTTCTGCTACATCCTTGGAGCTGAAGAGCCATGCTGCACAACTCTGCCTTGCTCTTTTTGGCAATAGTAAGATCAGAGCAGATCCAGTTGCCTCAGAATGCCTAGAACCCCTCATATCACTGATGCAATCTGGTTCTGAGACAGCAATAGAATCTGGCGTTTGTGCTTTTGACAGATTGTTGGAAGATGAACAACAGGTGGAGCTTGCAGCAGCCTACAATATTGTGGATCTCCTTGTCAACTTGGTTTCTGGTACAAACTATCAACTTATTGAGGCTACCATATCTGCTCTCATCAAATTGGGCAAAGACAGGACTCCAAGCAAACTTGATATGGTGAAAGCAGGCATTATTGATAATTGTCTCAAGCTACTACAATTAGCACCTAGCTCACTATGTTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATAGCAGTGCAATTGCTAGAAGTTCAGATGCTGCAGAAATTGTAGAACCTCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAACATAGTGCCTTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTGAAGCTTACTCCTAGTCAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATACAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTACCCCTTGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCGATAAAAGCATTGGAAAAGATTTCCAAAAGTTGGCCAAAGGCAGTTGCTGATGCAGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGAAGACCCTCAGCCACCACATGCACTCTGGGAATCAGCTGCCTTAGTTCTCTCTAATGTATTACGTTCCAATGGTGATTACTATTTTAAAGTTCCTGTAGTGGTTCTTGTAAAACTTCTGCACTCAACACTTGAGAGTACAATTACCATAGCCCTTAATGCTTTAATAGTTCATGACAGAAGTGATGCTTCAAGTGCTGAACAGATGATGGAAGCCGGAGCTATGGATGCTCTGTTGGACCTTTTAAGATCCCATCATTGTGAAGAAGCATCTGGTAGATTACTCGAAGCTTTGTTTAACAATGTGAGAGTACGAGAGATGAAGGTATCGAAGTATGCTATAGCACCTTTATCCCAGTACCTATTAGATCCACAAACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCCTTGGGAGATCTTTCCCAGCATGAAGGACATGCTAGAGCTAGTGACTCTGTTTCTGCATGTCGTGCATTGATAAGTTTACTTGAAGATCAGCCAAATGAAGAAATGAAAATGGTGGCTATATGTGCATTACAAACCTTTGTCATGAACAGCAGGACTAATAGACGAGCTGTTGCAGAAGCTGGAGGCATACTGGTGATTCAGGAATTGTTACTGTCTCCAAACACCGAAGTTGCTGGACAAGCCGCATTACTGATCAAATTTTTGTTTTCTACCCATACACTGCAAGAATATGTGTCAAATGAGTTGATCAGATCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACAATCAATGAGGAAGTCTTGAAAACTCTGCATGTAATATTCATGAACTTCCCTAAGCTCCACACATCTGAAGCGGCAACTCTTTGCATTCCTCATTTGGTAGGGGCACTTAAATCTGGTGGGGAAGCAGCTCAGGACTCTGTACTTGACACCTTTTGCTTGCTAAGACAATCTTGGTCAACTATGCCAATAGATGTAGCGAAGTCTCAGGCTATGATTGCTGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCGAGTTTCCATGAGAGGGCAGATACTCTTTTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAGCAAACTATGGGAAGCACTAATGCATTCTGCCGGTTGAAGATTGGCAATGGTCCTCCAAAACAAACAAAGGTGGTAAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTACCTCCAAAGGGCCAAAAGCTGCATATCATATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTTGGAAGAGTCACTATCCAAATTGATAAAGTTGTGACAGAAGGAGTTTATAGTGGATTATTCAGTCTAAATCACGACAGTAACAAAGATGGTTCTTCTCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATTTCTAATGATGACATTTGA 6408 0.4184 MSKSPSHEQRQSIYNASQPGEFNETTGMDDPESTMATVANFVEQLHANLSSPLEKELITARLLDVARRRKDARALIGSHAQAMPLFINILRNGTPPAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTNARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKKKEDKIVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGRENDISVRASAADALEALSSKSTKAKKAIVNADGIPILIGAIVAPSNECMQGDGGQALQEHSTRALANICGGMSALILYLGELSHSSRLAAPVGDIIGALAYTLMVFEEKVDVDEKQFDATQIEDILVTLLKPQCSKLIQERVLEAMASLYGNVCLSKWLIQADSKKVLIGLITMAAADVQEYLILSLTSLCCDRIGVWEAIKKREGVQLLISLLGLSSEQHQEYSVQLLAILTEQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSGGPKGQEASAMALTKLVRVADSATINQLLALLRGDCPSSKAHIIQVLGHVLTMATLNDLLEKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFVTRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALSRPTKSKAANKMSYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAEDVVSALTRVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGNAQCRFTVLALVDSLRTVDMDGTDAADALEVISLLARTKQGVNFTYPPWSALSEIPSSLELLVCCLAEGPSSVQDKAIKILSRLCGDQPVVLGELLSASSKSIGSLVNRIMNSSSLEVKVGGAALLICAAKEMRDLSMDSLDASGYLKPLIYSLVDMIKQSCGYSSLDIEVCTPRGFMERNGFQEVDEFDIPDPAIVLGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALSDKLVRHTSNPQAEYEDTEGIWISGLLLAILFQDENVALSPVTMRVIPSITLLLRSEEVIDKYFAAQAMASLVCNGNKGIDLAIANSGAVAGLITIIGHIDSDMPNLMALSEEFSLVRNPDQVVLDHLFEIEDVRVGSTARKSIPLLVDLLRPIPERPSAPPVAVRLLISIADGSDTNKLILAEAGALEALNKYLSLSPQDSTEAAISELLRILFCNSELVKHEASTSSMNQLIAVLRLGSRNARYSAARALNELFDADNIRDSELAKQAIQPLVDMLNTTLGSEQEAALMALIKLTSGNSSKVSLFTDVEGNPLKSLFKILSSATSLELKSHAAQLCLALFGNSKIRADPVASECLEPLISLMQSGSETAIESGVCAFDRLLEDEQQVELAAAYNIVDLLVNLVSGTNYQLIEATISALIKLGKDRTPSKLDMVKAGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISKSWPKAVADAGGIFELAKVIIQEDPQPPHALWESAALVLSNVLRSNGDYYFKVPVVVLVKLLHSTLESTITIALNALIVHDRSDASSAEQMMEAGAMDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHEGHARASDSVSACRALISLLEDQPNEEMKMVAICALQTFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQDSVLDTFCLLRQSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCRLKIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIICKSKNTFGKTTLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIWSNRISNDDI* 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0812 2135 Gene3D - 369 619 IPR011989 -
Apr9g0812 2135 Gene3D - 1345 1604 IPR011989 -
Apr9g0812 2135 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2006 2112 IPR035892 -
Apr9g0812 2135 CDD C2 2009 2099 - -
Apr9g0812 2135 Gene3D C2 domain 2010 2133 IPR035892 -
Apr9g0812 2135 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 17 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Apr9g0812 2135 Pfam C2 domain 2008 2107 IPR000008 -
Apr9g0812 2135 Gene3D - 1610 2009 IPR011989 -
Apr9g0812 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Apr9g0812 2135 SUPERFAMILY ARM repeat 72 311 IPR016024 -
Apr9g0812 2135 Gene3D - 999 1157 IPR011989 -
Apr9g0812 2135 MobiDBLite consensus disorder prediction 1 32 - -
Apr9g0812 2135 PANTHER - 17 2133 - -
Apr9g0812 2135 Gene3D - 158 356 IPR011989 -
Apr9g0812 2135 Gene3D - 620 963 IPR011989 -
Apr9g0812 2135 Gene3D - 21 157 IPR011989 -
Apr9g0812 2135 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Apr9g0812 2135 SUPERFAMILY ARM repeat 1176 1544 IPR016024 -
Apr9g0812 2135 SUPERFAMILY ARM repeat 382 662 IPR016024 -
Apr9g0812 2135 SMART arm_5 201 242 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1416 1456 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1206 1246 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 751 791 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 710 750 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 69 110 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 111 151 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1834 1874 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 459 500 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1458 1498 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 287 336 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1708 1749 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 244 285 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 502 542 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1375 1415 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 156 200 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 1543 1584 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 544 584 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 623 663 IPR000225 GO:0005515
Apr9g0812 2135 SMART arm_5 665 705 IPR000225 GO:0005515
Apr9g0812 2135 SMART C2_3c 2008 2104 IPR000008 -
Apr9g0812 2135 SUPERFAMILY ARM repeat 635 961 IPR016024 -
Apr9g0812 2135 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Apr9g0812 2135 SUPERFAMILY ARM repeat 1612 2005 IPR016024 -
Apr9g0812 2135 ProSiteProfiles C2 domain profile. 1988 2105 IPR000008 -
Apr9g0812 2135 Gene3D - 1164 1344 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0812 Apr-Chr9 15595135 15605717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0812 402 789 U-box Gene Family AT3G46510 21.622 1.86e-07 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0812 - - aprc:113846793 3990.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0812 9 15595135 15605717 Apr9g0812 9 15595135 15605717 ECH