Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0811 ATGGAAGGTGAAGAAGGCAAAAAATCTCCCCAAAAGACCCCATCACACAGTCAACTTGAGCAAGTTGACTCTGATTTTGTTCTAGCATTTGGCTTGCAAGAGCAAGATGGGACATTCACAACTTTTGCAACATTTGAAAGTGATAGTGAGAGTGAATCCTCTTTTGGCAATGATGATGATGATGGCGGTGATGATGCTGATTTTTTCCTGAGCCAAGAGTTTGAAACCGACCTTCGGTTTCTTGAGAGTGAAGGAAGCAATGATGATGATTATGATGATGATGAAGGAATGGAAGGAGATGTTATTGATGTGGATGAGTTGACTTATGAAGAGTTGATTGAGTTGGGTGATTTTATAGGAAAAGAGAAGAGAGGGTTATCACCTAATGAAATTTCTTCATGCTTGCAATCTTGCACTTTCAATGCTGCTGAAAACAAAAGTGGAATTGATCTTTGTGTGATTTGTCAGGTTGAATATGAAGAAGGTCAGGCCTTGGTGGCAATTCAATGTGAACACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGCCCAATATGTAGCAGTGAAATTTCAGTTCCCAAAAGGGTTAATTAA 612 0.3905 MEGEEGKKSPQKTPSHSQLEQVDSDFVLAFGLQEQDGTFTTFATFESDSESESSFGNDDDDGGDDADFFLSQEFETDLRFLESEGSNDDDYDDDEGMEGDVIDVDELTYEELIELGDFIGKEKRGLSPNEISSCLQSCTFNAAENKSGIDLCVICQVEYEEGQALVAIQCEHPYHTDCISKWLQIKKVCPICSSEISVPKRVN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0811 203 Pfam Ring finger domain 151 192 IPR001841 -
Apr9g0811 203 MobiDBLite consensus disorder prediction 52 67 - -
Apr9g0811 203 MobiDBLite consensus disorder prediction 1 20 - -
Apr9g0811 203 SMART ring_2 152 192 IPR001841 -
Apr9g0811 203 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Apr9g0811 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 200 IPR045191 GO:0061630
Apr9g0811 203 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 200 - -
Apr9g0811 203 SUPERFAMILY RING/U-box 110 199 - -
Apr9g0811 203 MobiDBLite consensus disorder prediction 42 67 - -
Apr9g0811 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 201 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0811 Apr-Chr9 15586649 15587301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0811 86 196 C3H Transcription Factor Family AT3G63530 42.982 7.24e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0811 K19045 - gmx:100777284 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0811 9 15586649 15587301 Apr9g0811 9 15586649 15587301 ECH
Apr1g0187 1 2073365 2074120 Apr9g0811 9 15586649 15587301 PCT