Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0794 ATGTCGCGGATATGCGTCAAGAATCTCCCCAAATACGTTGCTGAAGATCGACTTCGAGAATTCTTTTCTCAGAAAGGAGAAATCACCGACGTCAAGCTTATGCGTACTAAAGACGGTAATAGTCGCCAATTTGCTTTTATTGGATTTCGTACTCAAAGTGAAGCTCAAGAAGCTATTCGATATTTCAATAGATCTTACCTTGATACATCTAGAATTACTTGTGAGGAGGCACGAAAACTTGGTGATGCGAATCTTCCTCGTCCGTGGAGTCGACATTCGAAAAAGAAAGTCAATGAAGTGACCACTCCGGATGCGGACGAACGTGGTGGAGCCAAGGTTCGGGGACCAGATGGTTCTAAGGACAGTGTTGATATTGATGATCCACAGCTTCAAGATTTTCTTCAGGTTATGCAGCCTCGGGTTAAGTCTAAATTGTGGGCGAATGATACATCAGTTGTGACCAATGTTGGCAATGACCAAGTTATATTAGAAAAGGACAACAAAGGTACATTGGATGCAATCTGTCAGAGTGGCTCATTAGTAGATGGGGTTTTGAATAATTCTGAACCCAACAAACCATGTGGGCATGAACATGATGAAGTCATTTCTGATATGGATTATTTCAAGAGTAGAGTGACGAAAGAGTGGTCTGACTCTGAAAGTAGTGAAGACGATGATGGTGACAGCGACGACAATGTTGATGATGACACTGATGACAAGGACAATGATAGTCATGCTAGCGAGGATGAAGAAAATCGTGATGGTGCTCAAGAGGTAGACTTAGAGGGCCAAGAAGATACCTGTGGAGAGGATGTTGCCCACGAAAAAACTCAAGTGAATGCAACTGAGCAAGGGGGGCATTTATCAAAACCAGAAGATGAGAAAGGAGCTTTTGAGTCCTGTCGACTGTTTGTTCGTAATCTGCCATATACGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCAGTTTGGTAGTGTATCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTTTACAGTTCCAGAATTTGCAGCCAGGGCACTAGACGAATTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCGGCCTTACAAAGACCTTCAGACAATCACGAGAGCAATGTTTTGAAGGAACAAAGCTCTAAAACCCTTAAACAACAGAGAGAGGAAAAAAGGAAAGCAGCTGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCGGATACAGTTGTGGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTTCTTGACCGAGAAGCTGATGATCTGGCAGTTCGTATTGCTCTGGGAGAAACTCAAGTGATTTCAGAGACAAAAAAGGCATTTAAAAATGCTGGGGTGAATGTAGAGTCTTTGGAGGAACTTGCTAATAATAAAGTTGATGGCTTAAAAAGAAGTAACCATGTGCTTCTAGTGAAGAACTTGCCATATGGTTCAACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAATTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCATTGGTTGTTTTCCTCGAACCAGCTGAAGCACGTGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAGGGATGCTCCATTATACTTGGAGTGGGCTCCTGCCAATATTCTTAGCCTAAGCCCAGCATCAAAAAGTAATGACATGAATGGTGCAATTGGTGAAAATGATGCCAAGCGGCAGATATTGGAGCAACATGTGGAAAGAATATCAGATGTGGATATTGATCCAGACAGAGTAGAGGCACGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAATGTTTGCGGAATCATTTTAGTGAACACATGAAAGAGGGAAGAGTTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCGGAGACTGCTACAAATGTTTGCAGAGATCTACAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACTTTGCCATGTTAAGAATGATGGGAAAACACAAAAGACGGTTGAGAAGGATAAGAGTTCAACAAAATTGCTTGTAAAAAATGTTGCTTTTGAGGCAACAGAGAAAGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGGTTGCCCATGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTCAAAGCACTTTCAAGCACCCACCTCTACGGTAGGCATCTGGTGATAGAGAGAGCCAAAGAAGGTGAGAGTTTGGAAGAATTGCGTGCTCGAACAGCTGCTCAATTTAGTGAACATAATGGATTACAAAATGCTACTAAATTATCCAAGAAGAGGAAGCAAATTGACATCTTAGATGAAGGAAGGATGAAGTTTGAAAGAATTGCTGGTTAA 2526 0.4129 MSRICVKNLPKYVAEDRLREFFSQKGEITDVKLMRTKDGNSRQFAFIGFRTQSEAQEAIRYFNRSYLDTSRITCEEARKLGDANLPRPWSRHSKKKVNEVTTPDADERGGAKVRGPDGSKDSVDIDDPQLQDFLQVMQPRVKSKLWANDTSVVTNVGNDQVILEKDNKGTLDAICQSGSLVDGVLNNSEPNKPCGHEHDEVISDMDYFKSRVTKEWSDSESSEDDDGDSDDNVDDDTDDKDNDSHASEDEENRDGAQEVDLEGQEDTCGEDVAHEKTQVNATEQGGHLSKPEDEKGAFESCRLFVRNLPYTTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGIAYILFTVPEFAARALDELDNSIFQGRLLHVMPALQRPSDNHESNVLKEQSSKTLKQQREEKRKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDFLDREADDLAVRIALGETQVISETKKAFKNAGVNVESLEELANNKVDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGNLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYRDAPLYLEWAPANILSLSPASKSNDMNGAIGENDAKRQILEQHVERISDVDIDPDRVEARSLFVKNLNFKTTDECLRNHFSEHMKEGRVLSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQLCHVKNDGKTQKTVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSEHNGLQNATKLSKKRKQIDILDEGRMKFERIAG* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0794 841 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 817 - -
Apr9g0794 841 Coils Coil 391 411 - -
Apr9g0794 841 MobiDBLite consensus disorder prediction 213 266 - -
Apr9g0794 841 MobiDBLite consensus disorder prediction 88 126 - -
Apr9g0794 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
Apr9g0794 841 SUPERFAMILY RNA-binding domain, RBD 493 582 IPR035979 GO:0003676
Apr9g0794 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 559 IPR000504 GO:0003723
Apr9g0794 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 373 IPR000504 GO:0003723
Apr9g0794 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Apr9g0794 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 718 785 IPR000504 GO:0003723
Apr9g0794 841 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 618 692 IPR000504 GO:0003723
Apr9g0794 841 SMART rrm1_1 717 788 IPR000504 GO:0003723
Apr9g0794 841 SMART rrm1_1 617 695 IPR000504 GO:0003723
Apr9g0794 841 SMART rrm1_1 3 75 IPR000504 GO:0003723
Apr9g0794 841 SMART rrm1_1 497 564 IPR000504 GO:0003723
Apr9g0794 841 SMART rrm1_1 302 375 IPR000504 GO:0003723
Apr9g0794 841 MobiDBLite consensus disorder prediction 83 126 - -
Apr9g0794 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 568 IPR000504 GO:0003723
Apr9g0794 841 CDD RRM6_RBM19_RRM5_MRD1 716 790 - -
Apr9g0794 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 716 792 IPR000504 GO:0003723
Apr9g0794 841 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 817 - -
Apr9g0794 841 MobiDBLite consensus disorder prediction 385 412 - -
Apr9g0794 841 CDD RRM3_RBM19_RRM2_MRD1 302 375 - -
Apr9g0794 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Apr9g0794 841 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Apr9g0794 841 MobiDBLite consensus disorder prediction 379 412 - -
Apr9g0794 841 SMART rrm2_1 3 75 IPR003954 GO:0003676
Apr9g0794 841 SMART rrm2_1 302 375 IPR003954 GO:0003676
Apr9g0794 841 SMART rrm2_1 717 788 IPR003954 GO:0003676
Apr9g0794 841 SMART rrm2_1 617 695 IPR003954 GO:0003676
Apr9g0794 841 CDD RRM4_RBM19_RRM3_MRD1 496 567 - -
Apr9g0794 841 SUPERFAMILY RNA-binding domain, RBD 602 703 IPR035979 GO:0003676
Apr9g0794 841 SUPERFAMILY RNA-binding domain, RBD 711 794 IPR035979 GO:0003676
Apr9g0794 841 MobiDBLite consensus disorder prediction 246 260 - -
Apr9g0794 841 SUPERFAMILY RNA-binding domain, RBD 288 384 IPR035979 GO:0003676
Apr9g0794 841 CDD RRM1_MRD1 2 77 - -
Apr9g0794 841 Gene3D - 211 389 IPR012677 -
Apr9g0794 841 MobiDBLite consensus disorder prediction 219 245 - -
Apr9g0794 841 Gene3D - 1 124 IPR012677 -
Apr9g0794 841 Gene3D - 591 708 IPR012677 -
Apr9g0794 841 Gene3D - 709 815 IPR012677 -
Apr9g0794 841 Gene3D - 489 590 IPR012677 -
Apr9g0794 841 CDD RRM5_RBM19_like 616 697 IPR034423 -
Apr9g0794 841 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 616 699 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0794 Apr-Chr9 15273348 15281771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0794 609 809 Eukaryotic Initiation Factors Gene Family AT1G49760 28.505 1.00e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0794 K14787 - gmx:100798742 1303.12