Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0792 ATGCTGAAGGCGAAGGCATTCCAAGGCGCAAACGTGTTCATGTCGCGAAATCTGGTGCCACCCGAAGTCTTCGATGCGCTCCATGACGCCGTCAAAGATAACGGCGCCCAACTCCACCTCTGCTGCGACCCTTCCCGTAACGGCCCCAACGATTACCACATCATTTCTTCCAGTAAACACGAGAAGTTCGATGATCTCAAATCCAAGGGCTGTAAATTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCGAAAGAACGAAGGCCTCTGCCTAAACAAGGCTTCACTTGTTGCCTTGCCATGGATGGCGTAAAAGTACTCGCGTCTGGCTTTGATATGGATGAGAAGGTTAAGATAGAAGAGTTAGTGCTTGAAATGGGGGGAGCTTTACACACTAAAGCATCATTGGATTTGAACTTTGTCATTGTTAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGTATTGAAGAAACCAATAGTCACTTATGAATGGTTAAAACAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATCCCAGCAGATAAGCGTAAAGAGATGGAGAAGCATATTTTACAAAATGGTGGAAAATACTCTGCAGAACTGACAAAGAAGTGCACACATTTGATTTCTGAGGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGTTGGGGCCACATTCATATTGTGACAAAGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTTTGAGTGAGGAGTTCTTCCCTGTTCAGAATGGATGTGTATCTTCACATAAAGTAACCAGGGACTCAACAATGCAGCAAAGCCAAGAAAACGATATTGGAAAATTGCAATCTGCACCATCCTCAGGTGCTACAGTTTCAAATATGCCAGTTTTTCCCTGTGCTGAGTTTATGGATAGAGATCTAGAAGCTACAGTGTCAGATGACGTGTCCTCTGTTCGAAATGCTCCTTTATTTGTTAAAGAGGCAGATGCTGAAGTGTCTCCATTGCAGACCACCAATGAATTGAACTTTGATGGTGCTCTTGCCAATGATTCTGAATCTGATGATAATGACCTTTACTTATCAGAGTGCAGAATATTACTAGTTGGCTTTGAAGCTTGTGAGATGCGGAAATTAGTTAGTATGGTGCGTAGAGGTGGAGGTTCCCGGTATATGTTTTTCAATGACAAGTTGACACACATCGTAATTGGGAATCCTACTGAAATGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACTTCTTGGCTTGAAGATTGCGACCGTGAAAAGAAAGAAGTCCCTGTTCTTAGGAGACATGTTGCACTTGATCTATTTCATCCCAAAGCAAGCTTGGTAAAAGGAGCAGTGACCAGCAGTATGTCCATGGATCATGGTAAAAGCTCCAGCTTTCATCAAAGCTCGCAGATTGATCGGGTGGACTTTGGAGTTGTAATGCTGGAATGTTTGGAGAAACAAAATGAAGACAAAACTGATATGGGGTTCAGTAAAACAATGGGCAGAACTATGCTGCAAAATCAACATCCTGATAATAAATTGGGCACACAAAAGATGACACAACATGACTCCAGTCTTCAATATGCAAAGTCAACAAATGTTTTTATGGGGAAAATATTTTGTTTCTCAAACTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAATGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGACAAACAAAACATAGCGTCCACTATACTATTGAGTGTCATGGTGTAACACCCATGCGAACAGGTGATTCCAAATGCTCATATATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACAGTCACATTCTATATTCTCCACTTCCCTGCCATATTCCCTTGCCTGGATTTGAAAGCTTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGAAAGAATTCTACTGAGGAACTTGTGTTTTGTTCTGGGAGCTAAATTTGCAGAGAAAAAGTTTAGTAAGAAGGTTACCCATTTGTTGTGTAAATTCACTAATGGGCCCAAGTATGAGGCTGCTTGTAAATGGGGGATCCAAACAGTTACGTCTGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATTGATCAATTTTTACCAAAAGAAGTCACTGCTCAAGACCAGGAGGCAGGAATTTGCACTGTTAGTCAATTTCCTACCCAGGCTGTTCAAATGATAAGTGATATGTCCTCCCAGTCCTCACAAAATTTGAGAAACACAGCAAATAAAAATGTAGGTAGTGGAGTTAATAATCATGGGCCTGATTTTAGGATACCAAATATTTATAGCAAAAAGGCAAGGCTTGTGGAAGAACCTTGCGTATCCAATAAGATGCCTTCTGCAGTAAGTTCAAGTATTCCTGCCTATGACAATTTTTCTGAAGACAATATGCTTAAAGATGCTGGGCAGGTTTGTCATGCTATTCCTGATGTTGCTGCCGCAATTGAGGACTTGTTAGAGCAAACAAACAAGATGCATGATCACAGACTGACAGGGTGTGAGACAGATATTTATCCATCTGCTGATAGTTCAGTCCTTCCTGAAGATAATTCAAATCCTCGTACTGTCTTTGGATTGTCTAAACACTGGTTAAACAGAAGTGGCAGAAAAGATGATAATGGGGAGACTTCTCAAGACTTAAGAGCAGGAATATATGGTGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCTGGGAGGCAAATGCTTATAGATAGAGTCCGAACTCGAAGTAGCATGCACTGA 2898 0.4113 MLKAKAFQGANVFMSRNLVPPEVFDALHDAVKDNGAQLHLCCDPSRNGPNDYHIISSSKHEKFDDLKSKGCKLLGPRCVLSCAKERRPLPKQGFTCCLAMDGVKVLASGFDMDEKVKIEELVLEMGGALHTKASLDLNFVIVKNVLAAKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMEKHILQNGGKYSAELTKKCTHLISEAPEGDKYKVAKRWGHIHIVTKKWFDQSIARRACLSEEFFPVQNGCVSSHKVTRDSTMQQSQENDIGKLQSAPSSGATVSNMPVFPCAEFMDRDLEATVSDDVSSVRNAPLFVKEADAEVSPLQTTNELNFDGALANDSESDDNDLYLSECRILLVGFEACEMRKLVSMVRRGGGSRYMFFNDKLTHIVIGNPTEMEKKDVRSLAALGVIYVVKTSWLEDCDREKKEVPVLRRHVALDLFHPKASLVKGAVTSSMSMDHGKSSSFHQSSQIDRVDFGVVMLECLEKQNEDKTDMGFSKTMGRTMLQNQHPDNKLGTQKMTQHDSSLQYAKSTNVFMGKIFCFSNLFPEERRAEIVQWISQGGGEIISGQTKHSVHYTIECHGVTPMRTGDSKCSYISSHWIRSCLEAGSLLDVDSHILYSPLPCHIPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFAEKKFSKKVTHLLCKFTNGPKYEAACKWGIQTVTSEWIFECVKQNGVVAIDQFLPKEVTAQDQEAGICTVSQFPTQAVQMISDMSSQSSQNLRNTANKNVGSGVNNHGPDFRIPNIYSKKARLVEEPCVSNKMPSAVSSSIPAYDNFSEDNMLKDAGQVCHAIPDVAAAIEDLLEQTNKMHDHRLTGCETDIYPSADSSVLPEDNSNPRTVFGLSKHWLNRSGRKDDNGETSQDLRAGIYGGFSETQTESQVVSYEEDLSGRQMLIDRVRTRSSMH* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0792 965 ProSiteProfiles BRCT domain profile. 559 647 IPR001357 -
Apr9g0792 965 Pfam twin BRCT domain 190 253 IPR001357 -
Apr9g0792 965 Pfam twin BRCT domain 664 726 IPR001357 -
Apr9g0792 965 SMART BRCT_7 561 637 IPR001357 -
Apr9g0792 965 SMART BRCT_7 657 734 IPR001357 -
Apr9g0792 965 SMART BRCT_7 97 174 IPR001357 -
Apr9g0792 965 SMART BRCT_7 374 454 IPR001357 -
Apr9g0792 965 SMART BRCT_7 184 261 IPR001357 -
Apr9g0792 965 ProSiteProfiles BRCT domain profile. 660 744 IPR001357 -
Apr9g0792 965 Gene3D BRCT domain 659 777 IPR036420 -
Apr9g0792 965 CDD BRCT 103 170 - -
Apr9g0792 965 Pfam BRCT domain, a BRCA1 C-terminus domain 561 644 IPR001357 -
Apr9g0792 965 SUPERFAMILY BRCT domain 656 745 IPR036420 -
Apr9g0792 965 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Apr9g0792 965 SUPERFAMILY BRCT domain 186 271 IPR036420 -
Apr9g0792 965 SUPERFAMILY BRCT domain 562 649 IPR036420 -
Apr9g0792 965 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Apr9g0792 965 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Apr9g0792 965 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 953 - -
Apr9g0792 965 CDD BRCT_TopBP1_rpt2_like 658 734 - -
Apr9g0792 965 Gene3D BRCT domain 362 461 IPR036420 -
Apr9g0792 965 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Apr9g0792 965 Gene3D BRCT domain 556 653 IPR036420 -
Apr9g0792 965 Gene3D BRCT domain 36 94 IPR036420 -
Apr9g0792 965 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Apr9g0792 965 Gene3D BRCT domain 186 272 IPR036420 -
Apr9g0792 965 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Apr9g0792 965 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Apr9g0792 965 Gene3D BRCT domain 98 185 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0792 1 964 Core DNA Replication Machinery Family AT1G77320 49.510 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0792 K10728 - gmx:100804966 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0792 9 15234153 15258456 Apr9g0792 9 15234153 15258456 ECH