Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0788 ATGATGACCATGAATAAAGGGTCACTTGATTACTGGAGGAACTACTTTAGAGCTTCAAACTCAGACATATTTGACATCATTGGCCATGCGATCATGGTGGCTGCTTCTGATTGCCCAAAGGAGTTCAGGTTGAGGAGAGATGGGATAGCAGAGAGGTTGTTCTCTTGCAGGTTGAGTCGCTGTTTGGGGTGTGATAGAGTGGAGTTGTCTGTGTCAATGGATGATGAAGATGGTGATGATGAAGGTGGTAGTGGTGGTGGTGGTGGTCGCAAGAGTGACTTTGATGGGGATGGTGCTGAGTTTGAGTTTGAAGCAGGTGCAAGTAAGGAGAGCAAGGTCAATAGTAGTAGAGATGATCATGGAGAGATGAACCTGAATCAAGTTAGCAATTACAGCTATGGGGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTAAGCATGTTGAGGAGGTGTTCAGGATCAAGGAGATTTTGCTTAACTATGAAGAAGAGTCTGATTCAGTGCTATTGGATTCATTGAGGAGGCTTAAGCTAATGGAACTCACTGTGGATCTTCTGAAGGCAACTGAGATTGGGAAGGCTGTCAATCCTCTGCGAAAGCATGGATCAAGGGACATTTGTCAACTAGCACGGACTCTTATAGATGGTTGGAAGGAAATGGTGGATGCATGGGTCAAGGCTACCCCACCTATTACAGGCTCAGAAGGTACACCAGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCTGCTCCAACTGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGACGGAAATCCTCAACAGAGTGGGGAATTCATCAAGAACCGTGAAGATGGCAGAAGACCATCTCTCAGCAGTCACAATACAATGAACAGGAAACCTCAAGCTTCAAATGAGACAAACATCATTGCTAAGGACAGTAAGGGTCAAAAAACAAAGAAAAGTGAGGCGGCTATGAATCTAAATAAACCAGTATTTACTGATTCTGGCCCTGGCAGACCGCCAAATTCAACCATACAGAAAAAAGTCAATACTGAAGCCAAGATGCAACAAAATACAGTGAAGAGTGCTGTCCCCAAAAAGCCTCCTCATGTTCGTCAGCTAGATAAACTCAAGTGTTCCGATGATGCTGCAGTCCAAGTGAAGTTAGAAGCCACTAAGAGGAAACTTCAAGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGAGGACAGTACAGGTTATGGAGTTGCATGATCTGCCCAGGCAAGGGACTGGCCACAGAAATCCACACGCTAAACCTGGAAATCACAAGAGGCAATGGGCGCACGCGCTTGGACGAAGATAG 1392 0.4519 MMTMNKGSLDYWRNYFRASNSDIFDIIGHAIMVAASDCPKEFRLRRDGIAERLFSCRLSRCLGCDRVELSVSMDDEDGDDEGGSGGGGGRKSDFDGDGAEFEFEAGASKESKVNSSRDDHGEMNLNQVSNYSYGEAEALTDEIEEESKHVEEVFRIKEILLNYEEESDSVLLDSLRRLKLMELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKEMVDAWVKATPPITGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPQQSGEFIKNREDGRRPSLSSHNTMNRKPQASNETNIIAKDSKGQKTKKSEAAMNLNKPVFTDSGPGRPPNSTIQKKVNTEAKMQQNTVKSAVPKKPPHVRQLDKLKCSDDAAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELHDLPRQGTGHRNPHAKPGNHKRQWAHALGRR* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0788 463 MobiDBLite consensus disorder prediction 72 93 - -
Apr9g0788 463 MobiDBLite consensus disorder prediction 105 119 - -
Apr9g0788 463 Pfam TFIIS helical bundle-like domain 175 223 IPR017923 -
Apr9g0788 463 MobiDBLite consensus disorder prediction 277 337 - -
Apr9g0788 463 ProSiteProfiles TFIIS N-terminal domain profile. 151 226 IPR017923 -
Apr9g0788 463 SMART TFS2_5 150 225 IPR003617 GO:0005634
Apr9g0788 463 MobiDBLite consensus disorder prediction 305 326 - -
Apr9g0788 463 MobiDBLite consensus disorder prediction 231 255 - -
Apr9g0788 463 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 149 237 IPR035441 -
Apr9g0788 463 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 459 IPR044805 -
Apr9g0788 463 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 459 - -
Apr9g0788 463 Coils Coil 401 428 - -
Apr9g0788 463 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 141 233 IPR035441 -
Apr9g0788 463 MobiDBLite consensus disorder prediction 105 125 - -
Apr9g0788 463 MobiDBLite consensus disorder prediction 446 463 - -
Apr9g0788 463 MobiDBLite consensus disorder prediction 435 463 - -
Apr9g0788 463 CDD TFIIS_I 151 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0788 Apr-Chr9 14902265 14906201 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Apr9g0788 Med26 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0788 - - gmx:100775579 722.235