Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0785 ATGGCAAAACCTATACCAAAAATGGGTTCGCGTAAAAATGGACGTATTGGTTCACGTAAGCATGCTCATAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACTATTGTGACTGTTACAGATGTACGTGGTCGGGTTATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGTACACCATTTGTCGCTCAAACCGCAACAGGAAATGCTATTCGAACAGTAGCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGCCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGATGTAGGTCTCCAAAAAAAAAGACGTGCCAAGCCGATACAATAGGCATTGCAGTGCGAAGAGTTTTGCTAGGAGAAATAGAGGGAACATCTATTACACGTGCAAAATCGGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCAAGACGCATCTATTTGTTTCAAAGGTCCTGGATATATAACTGCTCAAGATTTTTACCAATGTTCATCGTTGCAGAAAAATTCTTATCCACGGCGTTAA 702 0.3974 MAKPIPKMGSRKNGRIGSRKHAHKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFVAQTATGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKKTCQADTIGIAVRRVLLGEIEGTSITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYITAQDFYQCSSLQKNSYPRR* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0785 233 Pfam Ribosomal protein S11 28 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr9g0785 233 PANTHER 30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC 1 136 - -
Apr9g0785 233 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 1 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr9g0785 233 TIGRFAM uS11_bact: ribosomal protein uS11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Apr9g0785 233 SUPERFAMILY Translational machinery components 24 136 - -
Apr9g0785 233 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 157 224 IPR036643 -
Apr9g0785 233 Gene3D - 157 227 IPR036643 -
Apr9g0785 233 MobiDBLite consensus disorder prediction 1 22 - -
Apr9g0785 233 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Apr9g0785 233 Gene3D Ribosomal protein S11 10 137 IPR036967 GO:0003735|GO:0005840|GO:0006412
Apr9g0785 233 Hamap 30S ribosomal protein S11 [rpsK]. 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0785 Apr-Chr9 14619187 14620094 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0785 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 35.455 3.34e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0785 K02948 - psom:113275326 355.91