Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0772 ATGGGAACTGAGGATGGGACTAGCAATGCTGGTCAGGACAGACCAGATCGGAGTTTGGACTTTGAAGCTGTGAATAATGGGGTGGCAATTGAAAGTGGAAGTGGTGGTGTTGAAGGTGAAGAAGTTTGGGTCTTGAAGAATGAAGTTATAAACAAAGGGGTGGTGATTGCTGATGGGAATGGTGTTGCTGTTTGGGTCTCAAAGAACAAAGTTATAAATGATGGTGTGACAATTGCTGATGGGAATGATATTGCTAAAGATGAAGGAATTCAAGGCTTGAAGAATGAAGCTGTAAATATTGGGGTGGCAGTTGCTAATCCAAATGGTATTGCTGAAGGTGGAGAACTTCAGGCCTTAAAAAATGAAGCTGTAAATAATGAGATGGTAATTACTGATGGGAATGGTGTTGCTAAAGGTGCAGAGGGACGGTGCTTGAAGAATAAAGCAGTAGATAATGGAGTGGCAATTGTACATGGGTTTGGTGTTGCTGAAGAGAACACTAGTGCAATTGAATGTTTTCGAACTTACAAGAGGCGCAAGCGTGTGAAGTCAAGTTCAGAAAACAAAATCCAGAAAGACAGTAGAGAATATGTGGAAGCTGAAAGCCATTTGTCTGACCAGGCGGTTAAGAAACTGTATGATTTAGCTGTAGGCAATACTTCAAAAGATTATTCTCATGGACATTGGGGGAATGTTGTACTAAAGCATTTATATCATTCATTAGGCAATGATAATGGTGGCATGGAGTGGTGCATAAGGGAAGCGCTCATCAGTCATCCTAAAACTAATTGTGCCACTATGATGATGGAAACTTCTAAAATTGACAAGGATGGTAAAGCATGCTCTTCTCAATTTGAGTGTTTGTCTCTTAGATTACAGAGTGAAGCTGATGGGCATGCAAATTTTATGCATAATGAATTTTCTAATGGGTCAGATGGTCGTGGTGCAACTGAGAAGTGTCAGCGTGTACTCTCCAATGTCTTAGCCTCTGAAAAGTTCAGTTCATTATGTAAAGCTCTACTTGAAAATTTCCAAGGAATGAAACCCGAAAGTGTATTTGATTTTAGTGCAATAAACTCAAGGATGAAAGGACAAGCTTATGAACAATCACCTACACTTTTCTTATCAGATGTTCAACAGGTTTGGAGAAATCTTCAAAATACTGGAAATCAGATTGTTGCTATAGCTAAGAGCCTCTCCAAAATGTCAAAAGCTTCCTTCTGTGAGCAGATGGGAATTTCAGCACCAAGCCCATTTGAAGATGAAAAACAAGTGGAATCCAACTCTCACATGAAACTAGAGCGGACAGAAGAATGTGCTACATACAAAATTGGCATTTGTAGGCATTGTGGAGATAAAGCAGACTGGACAAACTGTTTAGTTTGTGATTCGTGTGAGGAGATGTATCATGTGTCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTGCCAATTGTACTGCTAGTGGAATTGGATCTCGACATGAGAACTGTGTGGTGTGTGAACAGTTGAATGTCCCAAAGACCCTTAACAACATTTCTGGTGAAGAAAGCATCCCTATAAACGAGGACACACTGCATGAATTGGAAGAGAATTCAAATTGTACATATGATAGGGTTGAAGTTTCCGTAGGTGGGAAAAACTCATCTGACTGCAAAATTTGTAAAATGGAGGTGAATGGTGAAAAGATAAAAGTCTGTGGTCACCCTTTCTGCCCCAATCAATACTACCACGTAAGGTGTTTGTCAAGTAAGCAGCTTAAGTCATATGGTAGCTGTTGGTATTGCCCTTCTTGTTTATGTCAAGTTTGCCTCATCGATAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCATATCTACTGTATGAAACCTCCACGAAATTCTATTCCAAGGGGGAAATGGTTGTGCAGAAGATGTGATGCCGGGATCCAAGCAATACGTAAAGCAAGAAAGGCACATGAGTGTAACAAGTGGAAAGCTGGTGTGAATGATTCAAAGCCAAATGATAGTGCTGATAAGAAATGGAGCAACAAGCAAGCCCGGGAAGCAGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCAAATACTCTGAATTTTGAAGAGGACTTGAATGCAATCCAGATTGATTCAAAGAGAACATTAACATTTTGCTGA 2193 0.4031 MGTEDGTSNAGQDRPDRSLDFEAVNNGVAIESGSGGVEGEEVWVLKNEVINKGVVIADGNGVAVWVSKNKVINDGVTIADGNDIAKDEGIQGLKNEAVNIGVAVANPNGIAEGGELQALKNEAVNNEMVITDGNGVAKGAEGRCLKNKAVDNGVAIVHGFGVAEENTSAIECFRTYKRRKRVKSSSENKIQKDSREYVEAESHLSDQAVKKLYDLAVGNTSKDYSHGHWGNVVLKHLYHSLGNDNGGMEWCIREALISHPKTNCATMMMETSKIDKDGKACSSQFECLSLRLQSEADGHANFMHNEFSNGSDGRGATEKCQRVLSNVLASEKFSSLCKALLENFQGMKPESVFDFSAINSRMKGQAYEQSPTLFLSDVQQVWRNLQNTGNQIVAIAKSLSKMSKASFCEQMGISAPSPFEDEKQVESNSHMKLERTEECATYKIGICRHCGDKADWTNCLVCDSCEEMYHVSCIEPAVKEIPHKSWFCANCTASGIGSRHENCVVCEQLNVPKTLNNISGEESIPINEDTLHELEENSNCTYDRVEVSVGGKNSSDCKICKMEVNGEKIKVCGHPFCPNQYYHVRCLSSKQLKSYGSCWYCPSCLCQVCLIDKDDDKIVLCDGCDHAYHIYCMKPPRNSIPRGKWLCRRCDAGIQAIRKARKAHECNKWKAGVNDSKPNDSADKKWSNKQAREADKVGGMDMLLTAANTLNFEEDLNAIQIDSKRTLTFC* 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0772 730 ProSiteProfiles Zinc finger PHD-type profile. 444 494 IPR019787 -
Apr9g0772 730 Pfam PHD-finger 606 651 IPR019787 -
Apr9g0772 730 Pfam PHD-finger 446 493 IPR019787 -
Apr9g0772 730 ProSiteProfiles Zinc finger PHD-type profile. 603 653 IPR019787 -
Apr9g0772 730 Gene3D - 340 494 - -
Apr9g0772 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 656 IPR013083 -
Apr9g0772 730 SUPERFAMILY FYVE/PHD zinc finger 415 492 IPR011011 -
Apr9g0772 730 SUPERFAMILY FYVE/PHD zinc finger 605 654 IPR011011 -
Apr9g0772 730 SMART PHD_3 446 492 IPR001965 -
Apr9g0772 730 SMART PHD_3 606 651 IPR001965 -
Apr9g0772 730 SMART PHD_3 556 605 IPR001965 -
Apr9g0772 730 PANTHER HISTONE ACETYLTRANSFERASE 231 714 - -
Apr9g0772 730 ProSitePatterns Zinc finger PHD-type signature. 447 491 IPR019786 -
Apr9g0772 730 PANTHER D4, ISOFORM A 231 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0772 Apr-Chr9 14129157 14140164 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0772 605 668 C2H2 Transcription Factor Family AT3G01460 48.438 5.74e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g0772 PHD 1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0772 - - gmx:100810450 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0772 9 14129157 14140164 Apr9g0772 9 14129157 14140164 ECH