Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0769 ATGGAAACTGAGGATGGGGCTAATAATGCTGATAATGCGGATCAGTTAGGACTAGATCGGAGTTTGGATTTTGAAGGTGTGAATAATGGGGTGACAATTGATGGTGGAAATGGTGTTGCTGAAGGTGAAGAAGTTTGGGGCTTGAAAGATGAAGCTGTAAATAATGGGCTTACAAATGAAGGTGGAAATGATGTTGCTGAAGGTGAAGAAGTTCAGGGCTTGAAGAATGACACTGTAAATAATGAGGTGGCAATTGAAGGTGGAAATGGTGTTGTTGAAGGTGAAGAGGTTTGGGTCTTGAAGAATGAAGTTATAAATAATGGGTTAGTGATGGCTAATGGGAATGGTGTTGTTGAAGGTGAAGAAGTTTTGGTCTTGAAAAATGAAATTATAAATAATGGGTTGGCAATTGCTGAGGGGAATGGTGTTGCTGAAGATGGAGAAATTTGGGGCTTGAAGAATGAAGCTGAAAATACTGAAGAGGTAATTGCTGATGGGAATGATATTGCTGACAGTGGAGAAGTTCAGGGCTCTAAAATTGAAGCAGTAAACAATGAGATCGTAATTGCTGATGGAAATGGTGTTGCTGATGGAAATGGTGTTGCTGAAGGTAAAGATGGCTGGTGCTTGAAGAATGGAAAAGTAGATAATGGAGTGGCAATTGCACATGTGTTTGGTGTTGCTGCAGGGAATACTTGTGCAATTGAATGTTTTCAAACCTATAAGAGGCGCAAGCATGTAAAGTCAAGTTCAGAAAGTAAAGTCCAGGGAGACAGCAGAGAATATGTGGAAGCTGTGAGTCACCTTTCAGACCAGGAACCTTATAAAGCTGACAAAGATGGTCAAGAATGCTCTTCGCAATTTGAGTGTATGTCTCATAGATTACAGAGTGAAGCTAATGGACATGCAAATGTTATGCATAATGGATTTTCTAGAATGTCAGATGGCTGTGGTGCAACTGACAGGTGTCAGCGTGTGCTTTGCAATATCTTAGCCTCTGAGAAGTTCAATTCGTCATGTAAATTGCTACATGAAAATTTCCAAGGAATGAAAACTGAAAGTGTATTTGACTTTAGTGTGATAAACTCAAGGATGAAGGGGCGAGCTTATGAACAATCACCTACACTTTTCTTATCAGATATTCAACAGGTTTGGAGAAAGCTTCAAAATACGGGAAATCAGATTGTTGCTATAGCTAAGAGCCTCTCCAACATGTCAAAAGCTTCCTTCTGCGAGCAGTTCTGTAATCATGAATCCAAATCTCACATGAAACCAGAGCAAAAAGAAGAATGTGCTACATACAAAATTGGCACTTGCAGGCATTGTGGAGACAAAGCAGAGGGGACAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTACCATGTATCCTGTATTGAGCCTGCTGTGAAAGAAATACCCCACAAAAGCTGGTTCTGTTCCAATTGTACTGCTAGTGGAATTGGATCTCGACATGAGAATTGTGTAGTGTGTGAACGGTTGAATGTCCCGAAGACCCTTAACTTTGCTCGTGACGAAAGCATCCCAACAAATGAGGAAACACTAAATGAATTGGAAGAGAATTCAAATTGTACTTATGATGGGGTTCAGGTTTCCGTAGGTGGGAGAAACTCTCCTGACTGCAAAATTTGTAAAATGAATTTGGAGGGTGAAAAGATAAAAGTCTGTGGTCACCCTTTTTGCCCCAATAAAAACTACCACATAAGGTGTTTGTCAAGTAAGCAGATTAAGTCATATGGTCGCTGTTGGTATTGCCCTTCTTGTTTATGCCAAGTTTGCCTCACCGATAAAGATGATGATAAGATTGTACTCTGTGATGGCTGTGATCATGCATACCATATCTACTGTATGAAACCTCAACGAAATTCTATTCCAAAAGGGAAATGGTTCTGCCGAAAATGTGATGCAGGGATTCAGGCAATACGTCAGGCGAGAAAGGCATATGAGATGAAAGCTGGTGAGAGTGATTCAAAGCCAAATGATATTTTTGATAAGAAATGGAACAATAAGCGAGGAAGGGAATCTGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCAAATACCCTGAATTTTGAAGAGGACTTACATGCAATCCAGATTGACTCAGAGAGAACATTAACATTTTGCTGA 2157 0.4029 METEDGANNADNADQLGLDRSLDFEGVNNGVTIDGGNGVAEGEEVWGLKDEAVNNGLTNEGGNDVAEGEEVQGLKNDTVNNEVAIEGGNGVVEGEEVWVLKNEVINNGLVMANGNGVVEGEEVLVLKNEIINNGLAIAEGNGVAEDGEIWGLKNEAENTEEVIADGNDIADSGEVQGSKIEAVNNEIVIADGNGVADGNGVAEGKDGWCLKNGKVDNGVAIAHVFGVAAGNTCAIECFQTYKRRKHVKSSSESKVQGDSREYVEAVSHLSDQEPYKADKDGQECSSQFECMSHRLQSEANGHANVMHNGFSRMSDGCGATDRCQRVLCNILASEKFNSSCKLLHENFQGMKTESVFDFSVINSRMKGRAYEQSPTLFLSDIQQVWRKLQNTGNQIVAIAKSLSNMSKASFCEQFCNHESKSHMKPEQKEECATYKIGTCRHCGDKAEGTDCLVCDSCEEMYHVSCIEPAVKEIPHKSWFCSNCTASGIGSRHENCVVCERLNVPKTLNFARDESIPTNEETLNELEENSNCTYDGVQVSVGGRNSPDCKICKMNLEGEKIKVCGHPFCPNKNYHIRCLSSKQIKSYGRCWYCPSCLCQVCLTDKDDDKIVLCDGCDHAYHIYCMKPQRNSIPKGKWFCRKCDAGIQAIRQARKAYEMKAGESDSKPNDIFDKKWNNKRGRESDKVGGMDMLLTAANTLNFEEDLHAIQIDSERTLTFC* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0769 718 ProSiteProfiles Zinc finger PHD-type profile. 436 486 IPR019787 -
Apr9g0769 718 ProSiteProfiles Zinc finger PHD-type profile. 594 644 IPR019787 -
Apr9g0769 718 PANTHER D4, ISOFORM A 248 702 - -
Apr9g0769 718 SUPERFAMILY FYVE/PHD zinc finger 596 647 IPR011011 -
Apr9g0769 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 540 647 IPR013083 -
Apr9g0769 718 SMART PHD_3 599 642 IPR001965 -
Apr9g0769 718 SMART PHD_3 547 596 IPR001965 -
Apr9g0769 718 SMART PHD_3 438 484 IPR001965 -
Apr9g0769 718 Pfam PHD-finger 439 485 IPR019787 -
Apr9g0769 718 Pfam PHD-finger 597 642 IPR019787 -
Apr9g0769 718 ProSitePatterns Zinc finger PHD-type signature. 439 483 IPR019786 -
Apr9g0769 718 SUPERFAMILY FYVE/PHD zinc finger 438 489 IPR011011 -
Apr9g0769 718 Gene3D - 339 486 - -
Apr9g0769 718 PANTHER HISTONE ACETYLTRANSFERASE 248 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0769 Apr-Chr9 14024402 14044437 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0769 596 657 C2H2 Transcription Factor Family AT3G01460 41.935 1.12e-12 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr9g0769 PHD 5.4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0769 - - gmx:100810450 907.901