Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0744 ATGGAGGATATTTTAGCACCTGGTGAGGACACCAAGACTTGTCCCCGTGGTCACTGGACTCCTGCTGAGGATGAAAAGCTCCTCCTACTTGTTAAACAGTATGGTGCCCAGAACTGGAATTCAATTGCTGAAAACCTCCAAGGAAGAACAGGGAAAAGTTGCAGATTAAGGTGGTGCAATCAGCTTGATCCTAGACTTAACAGAAATCCATTTACAGAAGAGGAAGAAGAGAGGCTGCTTATAGCTCACCACATTTATGGGAACAGATGGGCACACATAGCCAAGCTCTTCCCAGGTCGAACTGACAATGCTGTGAAGAATCAATGGCACGTTACAATGTCACGAAAGCGAAGGGAGCAATCTAAGAAGAGAAGCTTCGATGACCTTCATAGAGATTCTAAAGGAACAAAATCTCATGACCCATTAGTTAGCTCGAGAGTTGATTTAGAGAATGCACGATCCTTTGACTTCAATGACCTCAATAGTGAAGAAAATAGGTTTGCATCACTTTGTCCCAATGGTTCTTTGACATTTAAATTTGGATGCATGCCATCTTTTGCGAACACTCTTCCTTTAGTGTATTCAATTGGTAAAGAAGGGAGTGATCTTTTTAAGTACCTCTCATCACAAAGCTCAGAAGCCTTTGACGGTTCCACCAAATTCATGACTCCTAAAGATAATAGCGTTGATGATGGAAGGATGAAGAGCGAATGTGATGACTCATCCGCAACCACAAAGTTGAATGCTTCTTCTATACTACAAGAACAAGCAGATGAGTCCAGTAATTTTGAACGGAAAGAAGTTACTTTCTTTGATTTTCTTGGTGTTGGTGTCTCTTCGTCATGA 846 0.4173 MEDILAPGEDTKTCPRGHWTPAEDEKLLLLVKQYGAQNWNSIAENLQGRTGKSCRLRWCNQLDPRLNRNPFTEEEEERLLIAHHIYGNRWAHIAKLFPGRTDNAVKNQWHVTMSRKRREQSKKRSFDDLHRDSKGTKSHDPLVSSRVDLENARSFDFNDLNSEENRFASLCPNGSLTFKFGCMPSFANTLPLVYSIGKEGSDLFKYLSSQSSEAFDGSTKFMTPKDNSVDDGRMKSECDDSSATTKLNASSILQEQADESSNFERKEVTFFDFLGVGVSSS* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0744 281 MobiDBLite consensus disorder prediction 226 240 - -
Apr9g0744 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Apr9g0744 281 MobiDBLite consensus disorder prediction 112 143 - -
Apr9g0744 281 Gene3D - 16 67 - -
Apr9g0744 281 SMART sant 67 115 IPR001005 -
Apr9g0744 281 SMART sant 15 64 IPR001005 -
Apr9g0744 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Apr9g0744 281 PANTHER MYB PROTEIN-RELATED 10 279 - -
Apr9g0744 281 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Apr9g0744 281 Gene3D - 69 141 - -
Apr9g0744 281 CDD SANT 19 60 IPR001005 -
Apr9g0744 281 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr9g0744 281 CDD SANT 70 110 IPR001005 -
Apr9g0744 281 MobiDBLite consensus disorder prediction 226 251 - -
Apr9g0744 281 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Apr9g0744 281 PANTHER TRANSCRIPTION FACTOR MYB56 10 279 - -
Apr9g0744 281 Pfam Myb-like DNA-binding domain 19 79 - -
Apr9g0744 281 MobiDBLite consensus disorder prediction 111 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0744 Apr-Chr9 13239462 13241351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0744 14 281 MYB Transcription Factor Family AT1G17950 41.993 4.24e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr9g0744 Myb_DNA-bind_6 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0744 K09422 - gmx:100802283 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0744 9 13239462 13241351 Apr9g0744 9 13239462 13241351 ECH
Apr1g0738 1 8810196 8811913 Apr9g0744 9 13239462 13241351 PCT