Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0682 ATGGGCTTCTGGAACGGTGAACGTAATCAAACCAATCAACAATCTGATATTGGTTCAGTTTTGAGGGATGGAAAAGAAATACTTTTTCAGGCATTCAACTGGGAGTCTCACAAATACAATTGGTGGAAAAATTTAGAAGGCAAAGTTCCTGACATAGCTAAAGCTGGATTCACTTCAGTATGGTTGCCACCACCAACTCAATCCTTCTCACCTGAAGGTTACACTCCACAGGACCTTTACTCTGTTGATAGTAAATATGGTTCCGAGAGACAATTAAAAGCTTTACTTCAAAAGATGAAGCAACACAGAGTTAGGTCAATGGCTGACGTAGTTATCAATCATCGTGCTGGCACCACCCAAGGACGCGGAGGGATGTATAATCGTTTTGATGGAATTCGATTAGCGTGGGATGAGCGTGCTGTGACATCATGTAGTGGTGGACTGGGTAATCCAAGCACGGGGGCCATTTTCCAGGGGTTTCCCAATATTGACCATACTCAAGATTTTGTGAGAAAGGATATCATAGGATGGCTCCGCTGGTTGCGTCATGACGTGGGCTTTCAGGATTTTCGTTTTGACTTTGCAAAAGGGTTTTCCCCAAAATATGTTAAGGAATATATTGAAGGAGCAAAGCCGTTGTTCTCGGTTGGGGAGTATTGGGATTCTTGCAACTACAGGGGTTCTACTTTGGACTATAACCAAGATAGCCATAGGCAGCGAATTATCAATTGGATTGATGGCACTGGACAACTTTCAACTGCATTTGACTTCACAACAAAGGGAATTCTTCAGGAAGCTGTCAAGGGAGAATTTTGGCGTTTGCGTGATACTCAAGGGAAGCCTCCAGGTGTGGTCGGGTGGTGGCCTTCAAGATCTGTCACATTTATAGATAATCATGATACGGGCTCAACTCAGGCTCATTGGCCTTTCCCCAGCAACCATATTATGGAGGGGTATGCATACATATTGACTCATCCTGGGATACCAACAGTTTTCTACGATCACTTCTTTGACTGGGGCAATTCAATTCGGGAGCAGATTTTGAAGTTGATTGACATTCGCAAGCGTCAAGGTATTCAAAGTAGATCGCCTATCAAGATTCTGGAGGCCAAGCAAAACCTTTACTCTGCAATCATCGGGGAGAAATTATGCATGAAGATTGGAGATGGTTCGTGGTGCCCATCTGGGAGGGAATGGACACTATCAACTTCTGGCCATAATTATGCTGTATGGAATAAGCAGTGA 1245 0.4386 MGFWNGERNQTNQQSDIGSVLRDGKEILFQAFNWESHKYNWWKNLEGKVPDIAKAGFTSVWLPPPTQSFSPEGYTPQDLYSVDSKYGSERQLKALLQKMKQHRVRSMADVVINHRAGTTQGRGGMYNRFDGIRLAWDERAVTSCSGGLGNPSTGAIFQGFPNIDHTQDFVRKDIIGWLRWLRHDVGFQDFRFDFAKGFSPKYVKEYIEGAKPLFSVGEYWDSCNYRGSTLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGEFWRLRDTQGKPPGVVGWWPSRSVTFIDNHDTGSTQAHWPFPSNHIMEGYAYILTHPGIPTVFYDHFFDWGNSIREQILKLIDIRKRQGIQSRSPIKILEAKQNLYSAIIGEKLCMKIGDGSWCPSGREWTLSTSGHNYAVWNKQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0682 414 CDD AmyAc_arch_bac_plant_AmyA 27 365 - -
Apr9g0682 414 PANTHER ALPHA-AMYLASE 22 413 - -
Apr9g0682 414 SMART alpha-amyl_c2 355 413 IPR012850 GO:0004556|GO:0005509|GO:0005975
Apr9g0682 414 SUPERFAMILY (Trans)glycosidases 33 343 IPR017853 -
Apr9g0682 414 Pfam Alpha amylase, catalytic domain 48 117 IPR006047 GO:0005975
Apr9g0682 414 Gene3D Glycosidases 26 358 - -
Apr9g0682 414 Pfam Alpha-amylase C-terminal beta-sheet domain 356 411 IPR012850 GO:0004556|GO:0005509|GO:0005975
Apr9g0682 414 Gene3D - 359 413 IPR013780 -
Apr9g0682 414 PANTHER ALPHA-AMYLASE 2-RELATED 22 413 - -
Apr9g0682 414 SUPERFAMILY Glycosyl hydrolase domain 361 413 - -
Apr9g0682 414 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr9g0682 414 PRINTS Alpha-amylase signature 187 198 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr9g0682 414 PRINTS Alpha-amylase signature 290 302 IPR006046 GO:0004556|GO:0005975|GO:0043169
Apr9g0682 414 PIRSF Alpha-amylase_plant 7 414 IPR013775 GO:0004556|GO:0005509|GO:0005975
Apr9g0682 414 SMART aamy 26 366 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0682 Apr-Chr9 11183574 11189135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0682 1 413 Glycoside Hydrolase AT1G76130 75.545 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0682 K01176 - gmx:100813490 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0682 9 11183574 11189135 Apr9g0682 9 11183574 11189135 ECH