Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0664 ATGCTCGATTCCGTCCTCCTCGCCCTTTTCTTGCCCTGCCTCGGCATGAGCGCAGTTTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACCACTCACCACACCCAACCCACGTTACCGGCTAAGCCCGTCTCCGAAAAGGGCCTCTCCCCTTCCGAGCTCGATAAGTTGCCCAAAATTACCGGAAAAGAGCTTGTCTTGGGAACCGAATGCGCCGTTTGCCTGGAGGAGATCGGGATCGAGCAACCCGCACGAGTGGTTCCCGGTTGCAACCACGGCTTCCATTTGGAATGCGCTGATGCCTGGCTCTCCAAGCACCCTCTCTGCCCCGTTTGTAGAACCAAACTCGACCCTCTCCTTTTCACTCCCTCTCAAAATCCATGCTGA 387 0.5633 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTHHTQPTLPAKPVSEKGLSPSELDKLPKITGKELVLGTECAVCLEEIGIEQPARVVPGCNHGFHLECADAWLSKHPLCPVCRTKLDPLLFTPSQNPC* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0664 128 SMART ring_2 71 112 IPR001841 -
Apr9g0664 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 128 - -
Apr9g0664 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 119 IPR013083 -
Apr9g0664 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Apr9g0664 128 Pfam Ring finger domain 70 113 IPR001841 -
Apr9g0664 128 SUPERFAMILY RING/U-box 70 119 - -
Apr9g0664 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0664 Apr-Chr9 10868329 10868715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0664 1 128 C3H Transcription Factor Family AT5G42200 52.206 5.63e-43 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0664 K19037 - gmx:100817919 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0664 9 10868329 10868715 Apr9g0664 9 10868329 10868715 ECH
Apr9g0664 9 10868329 10868715 Apr5g1682 5 20365726 20366790 PCT