Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0661 ATGGGCAAAGTGATGCTTGTTTTGGCCAGTCTCATTGGACTATGCTGTTTCACAATCAACACTTACGCCTTCTCACCTTCTGGATGGACCAATGCACATGCCACTTTTTATGGGGGAAGGGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGATATGGGACTAGAACTGCTGCTCTGAGTACTGCCTTATTTAATGATGGAGCTTCCTGTGGACAGTGCTACAAAATCATATGTGATTACAAAACAGACCCCAGATGGTGTATTAAAGGAAGATCTGTAACCATAACTGCCACCAACTTTTGCCCTCCTAATTTCGCTCTTCCTAACAACAATGGAGGTTGGTGCAACCCACCTCTCATGCATTTTGATATGGCCCAACCCGCTTGGGAAAAGATTGGTATCTACAGAGGAGGGATTGTGCCAGTCTTGTTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCACTGTGAATGGGAGAGACTACTTTGAACTTGTGTTGATCAGCAATGTGGCTGGGGCTGGATCCATTCAATCTGTGTCCATCAAAGGCTCAAAAACCGACTGGATGGCAATGTCAAGAAACTGGGGTGCTAATTGGCAATCCAATGCGTATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCTCTGATGGAGAAACAAGAGTTTTCCAAAATATAGTTCCAGCAAATTGGGCTTTTGGACAAACATTCTCAAGCCCGGTCCAGTTTTAA 747 0.4498 MGKVMLVLASLIGLCCFTINTYAFSPSGWTNAHATFYGGRGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSVTITATNFCPPNFALPNNNGGWCNPPLMHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTVNGRDYFELVLISNVAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSLSFRVTTSDGETRVFQNIVPANWAFGQTFSSPVQF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0661 248 Pfam Lytic transglycolase 57 144 IPR009009 -
Apr9g0661 248 Gene3D - 15 151 IPR036908 -
Apr9g0661 248 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Apr9g0661 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Apr9g0661 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Apr9g0661 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Apr9g0661 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Apr9g0661 248 SUPERFAMILY Barwin-like endoglucanases 28 173 IPR036908 -
Apr9g0661 248 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Apr9g0661 248 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Apr9g0661 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Apr9g0661 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Apr9g0661 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Apr9g0661 248 SMART dpbb_1 57 145 IPR007112 -
Apr9g0661 248 PANTHER EXPANSIN-A15 3 248 IPR002963 GO:0009664
Apr9g0661 248 Gene3D - 155 248 IPR036749 -
Apr9g0661 248 PANTHER EXPANSIN 3 248 - -
Apr9g0661 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0661 Apr-Chr9 10792844 10793853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0661 57 248 Expansin Gene Family AT1G20190 80.729 1.80e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0661 - - gmx:548040 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0661 9 10792844 10793853 Apr9g0661 9 10792844 10793853 ECH