Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0656 ATGGTTACGACTGCTAAATCTTCTAACCATCACTCGCCGCCTAGTGCTCCGTCATCGGCGCAGCCCGGTGAAAGTAATAGCCCTAAATTCCAGCGGAAAAACCTTTCCTCTCCGTGGGCTCAGGTCGTTCGCGGCGGTGAGCCGGAATCAGCGGCCAGCATTCACCAATCGCCGCCGCCGTCGTCATCGTCGACGTCGTCCCTCGCTGCCGACCAAGCGCCGTCGTCTGATTGTTCCCCAAGGGCGATTCCGGCTTCGCCGCCGGTGGATAATTCTAATTCGGGTGGTATTGTAGATAATTCTGATGGTAGTGAGGGCAATGCGGGTCGTTCTAAGAGGCCCGCTTGGAACAAGGCTTCAAACGGCGGCGTCGAGGCTGGACCTGTAATGGGCGCTGAATCATGGCCCGCTTTGTCTGCATCCACCAAAGCTTCTGCTAAATTGCCAGCTGACTCGTCCTCCAAGACTGTTGCCGATGGATCACTCTCCACTTCTCAGGGGTTGGTAACTTCGCAATCTCCTCAGAAACAAGCTACTACTAATGCAAAACCTAATTCTGCAACAAATTATAGCATGCCTAACAGACAAAGATCAGTGAAGCGGGTGAGTGGCAGCAACCTTGGGTCTGGTCCTGCCCAGAGCATTTTCTCCAACCCCCCCACAGCACCACCACCCCCACCATTTCCTGTGTACCAGCTCCCTCCAGTTAGCTATGCTAATATGGTACCAGTGATTCCTGACCCTGCTCCAAGAGATCAGTACCGGAGCAATAACTGGGATACTAGACCATTAGTTGGGGGTTTTGTGCCTGCGATGAATGAGCATCGGGGTTCTTCTCGCAGGGGTTATTTTGGGCCCAATCCACGAGGAGATGGTTCCTATCATAATAATTATGTTGGCAGACGGGATCAGGATCGTGGAAATTACACGAATACTAGAGATGCTAATGTACCCCAACCAAGGATGCCTCCAAGAGGGTTACTGAGGCACCCACCACCTAGTACTGCTGCATATGTGGGCCCTCAGCCTATTGGACCATATGCTAACCCTATTGGATTTCCTGAGTTGTATTACTATCCAACAGTACCATTGGATCACTTTAGGGGCATGCCATTCTATGCTCCTCCTCCGCCTACAGCATTCTTTCCTGCACCAGAATCTCCTCTGTCCAATATGATAGTCAATCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAGAGATGAGTATTTAAGATCTAAGATGGATGAACAGGGTTGGGTTCCCGTTTCTTTGATAGCAAGCTTCCCTCGAGTTAGAAGTTTGACAAGCAGCACTCCGTTGATATTGGACTCCCTGAGAACTTCCACTATTGTGGAAGTGCAGGGTGACAAGCTGAGGAGGCACAATGAGTGGATGAAATGGCTGCCCTCTGCTCGGCAAAGTGCTGATTCTGGTTCAGTATCTCCTGTTGGAGCAAGACACAATAACTTGGCAGCTGATTTTCAAACTAATACTCTGGAAGAAACAACTAAAGATGAAGGTCCAACCAGTCAGTCTCAACTCTCAAATGGCGGTGATGCTACAGGGAGCAGCAGTTAA 1584 0.4987 MVTTAKSSNHHSPPSAPSSAQPGESNSPKFQRKNLSSPWAQVVRGGEPESAASIHQSPPPSSSSTSSLAADQAPSSDCSPRAIPASPPVDNSNSGGIVDNSDGSEGNAGRSKRPAWNKASNGGVEAGPVMGAESWPALSASTKASAKLPADSSSKTVADGSLSTSQGLVTSQSPQKQATTNAKPNSATNYSMPNRQRSVKRVSGSNLGSGPAQSIFSNPPTAPPPPPFPVYQLPPVSYANMVPVIPDPAPRDQYRSNNWDTRPLVGGFVPAMNEHRGSSRRGYFGPNPRGDGSYHNNYVGRRDQDRGNYTNTRDANVPQPRMPPRGLLRHPPPSTAAYVGPQPIGPYANPIGFPELYYYPTVPLDHFRGMPFYAPPPPTAFFPAPESPLSNMIVNQIEYYFSDANLVRDEYLRSKMDEQGWVPVSLIASFPRVRSLTSSTPLILDSLRTSTIVEVQGDKLRRHNEWMKWLPSARQSADSGSVSPVGARHNNLAADFQTNTLEETTKDEGPTSQSQLSNGGDATGSSS* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0656 527 MobiDBLite consensus disorder prediction 474 527 - -
Apr9g0656 527 MobiDBLite consensus disorder prediction 1 38 - -
Apr9g0656 527 SMART la 387 463 IPR006630 -
Apr9g0656 527 MobiDBLite consensus disorder prediction 54 74 - -
Apr9g0656 527 PANTHER LUPUS LA PROTEIN-RELATED 7 517 IPR045180 -
Apr9g0656 527 PANTHER LA-RELATED PROTEIN 1B 7 517 - -
Apr9g0656 527 MobiDBLite consensus disorder prediction 86 107 - -
Apr9g0656 527 CDD LAM 391 462 - -
Apr9g0656 527 Pfam La domain 393 448 IPR006630 -
Apr9g0656 527 Gene3D - 383 472 IPR036388 -
Apr9g0656 527 MobiDBLite consensus disorder prediction 270 325 - -
Apr9g0656 527 MobiDBLite consensus disorder prediction 1 228 - -
Apr9g0656 527 MobiDBLite consensus disorder prediction 473 527 - -
Apr9g0656 527 MobiDBLite consensus disorder prediction 138 216 - -
Apr9g0656 527 ProSiteProfiles La-type HTH domain profile. 383 472 IPR006630 -
Apr9g0656 527 SUPERFAMILY "Winged helix" DNA-binding domain 381 472 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0656 Apr-Chr9 10683648 10688262 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0656 K18757 - gmx:100785504 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0656 9 10683648 10688262 Apr9g0656 9 10683648 10688262 ECH
Apr9g0656 9 10683648 10688262 Apr5g1677 5 20331921 20335823 PCT