Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0615 ATGGTAGAAGGAAAAAAGCTGCAGACAGAAGCAGCCATGGCGGAAGCAGAACAGAACGCTCCTTCCTCGCCCGAGTGTGATGACCAAACAAAAATCAACAAGAAGAAGCTGCAGGAAAAGAAGAATGAGAGGATTGACAGCGTAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGATACAAAGGTGAATAACGTTACATCTGGAATCATGAGCACCGAGTCTTTCTCGTCTCTGGGATTGTTAGAACCTACTTCCAAAGCTATTACCGATATGGGCTTCCATCATATGACTCAGATTCAAGCGAGGGCAATTCCACCGCTTTTGCTCGGAAAAGACGTTCTTGGCGCTGCGAGAACAGGTGCTGGCAAAACCCTAGCTTTTTTAATTCCAGCGGTAGAGTTATTGCACAACGTTCAATTCACGCCGCGGAATGGAACGGGTGTAGTTGTCATATGCCCAACCCGAGAGCTCGCGATTCAGACGCATGCTGTGGCGAAGGAGCTTCTCAAGTACCATTCACAGACCCTTGGATTGGTAATTGGGGGTTCGGGTAGAAAGGGCGAGGCTGAGCGCATTGTTAAAGGCGTGAACCTGTTGGTGGCAACGCCAGGCCGCCTTCTCGATCACCTTCAGAATACAAAGGGCTTCCTGTATAAAAACTTGAAGTGCCTAATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTCGAGGAAGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGACAAACAGCTTTGTTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCTATATATATTGATGTCGATGATGGCAGAAAAAAAGTCACAAATGAAGGATTACAGCAGGGCTATGTTGTTGTTCCATGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCCTGAGGAGATATCAGTCAGAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGATTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCCCGGACTACCACCTTCTTCAACTTCTGCAAAGCTGAAAAGGGGATCTTGCTTTGTACTGATGTTGCTGCTCGCGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGAGTTGGTAGAACAGCTCGCGGTGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCATTATTTGAAGGCAGCAAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACTGTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAACGCACATTCTATGAAAGATATATTCAACGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTACAAACCCACCGAAGGTGAATCTGAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGAAAGAGAAGATGA 1626 0.4354 MVEGKKLQTEAAMAEAEQNAPSSPECDDQTKINKKKLQEKKNERIDSVEEEEEEEEEEEEEDTKVNNVTSGIMSTESFSSLGLLEPTSKAITDMGFHHMTQIQARAIPPLLLGKDVLGAARTGAGKTLAFLIPAVELLHNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFLYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSEKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNCMAKDAYRSYILAYNAHSMKDIFNVHRLDLQAVAASFCFTNPPKVNLNIDSSASKHRKKIRKVEGKRR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0615 541 SMART ultradead3 95 300 IPR014001 -
Apr9g0615 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 228 236 IPR000629 -
Apr9g0615 541 Gene3D - 293 537 IPR027417 -
Apr9g0615 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 438 IPR027417 -
Apr9g0615 541 PANTHER RNA HELICASE 25 522 - -
Apr9g0615 541 Pfam Helicase conserved C-terminal domain 312 416 IPR001650 -
Apr9g0615 541 SMART DUF4217_3 457 520 IPR025313 -
Apr9g0615 541 CDD DEADc_DDX18 87 284 IPR044773 GO:0003724|GO:0005524
Apr9g0615 541 Pfam DEAD/DEAH box helicase 100 271 IPR011545 GO:0003676|GO:0005524
Apr9g0615 541 SMART helicmild6 336 417 IPR001650 -
Apr9g0615 541 Coils Coil 34 68 - -
Apr9g0615 541 MobiDBLite consensus disorder prediction 28 47 - -
Apr9g0615 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 76 104 IPR014014 GO:0003724
Apr9g0615 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 466 IPR001650 -
Apr9g0615 541 Gene3D - 22 286 IPR027417 -
Apr9g0615 541 MobiDBLite consensus disorder prediction 48 63 - -
Apr9g0615 541 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 25 522 - -
Apr9g0615 541 CDD SF2_C_DEAD 297 427 - -
Apr9g0615 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 282 IPR014001 -
Apr9g0615 541 Pfam Domain of unknown function (DUF4217) 458 518 IPR025313 -
Apr9g0615 541 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0615 Apr-Chr9 9595431 9602170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0615 20 435 Eukaryotic Initiation Factors Gene Family AT3G13920 30.404 5.29e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0615 K13179 - gmx:100798290 939.102