Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0605 ATGCAATCTCAAACTTCAGATATGTTTGTTCTCTCAAACTCAAATACCTCCCACAATGGCAATTACCCAATTTCCTATTCTGACCAAGCATTTTCCTGCTGCAGACCCTTTTCCATTGACTCTGAAAGCAACCAAGCATCAAAACAAGAAAACAACAACTGTGACCTTTCTTCTCCCCCACCCTTGTCCTTTTTCCACTTCCCTTCTCCTCCCTTTGAAGACACCGAAATTTTCCTCCAACACCACCACGATTTCCTTCTTCATCAAACTCTATCTCATGACCCTGAGCCTCAACCCTTTATCACCGTCGAGGGTTCTATTAGAAGTGCTGAGCAGATCCCACGAAGAAAACATGGCAAGAAAGATAGGCACAGTAAGATTAACACGGCAAGAGGACTCAGGGATCGGAGAATGAGACTGTCCCTTGAAGTTGCAAAGAGGTTTTTCGGCTTGCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACCGTGGAGTGGTTACTAAACCAAGCCAAAGTTGAAATCAATCAACTAGAAAGAGAGAACAACAAGAATAAGAAGAAGAATCATCACACTTGTTGTAGCAGTGCTGGTGCCAAGAGTGCTGCTTCAACTTCGGAATGTGAAGAGGGTGTCTCTAGCCTTGATGAGGTTGTAGTGAGTGGAAATCAAGAACCACAAGAGGTGGTGCCCAAAGTTGTGAAGAGAAAGAAGATCAAGCATTCTAGAAAGAGTGCATTCCACCCACTTGCAAAGGAGTGTAGGAAAAAGGCGAGGGAGAGGGCAAGAGAGAGGACGAAAGAAAAGATGAGAAATCGTGGACTAGTTGATGATTCAAAGCAATGTAGAGAGGACATAAATCATGATCTGACCCAATTGGGTTCTTGGAACCCCTTTGGAACCGGTGAACAATGTGGTACTAAGAGCCGTACTGTGAATCCTTCCTTGGATGTTCTGACTGAGGCTAAAAAAGGAAGCCATCCCGCAAAGGAGCATTTGGGGACTGTAGATGCCATGGCACATGATGATGCTTTGGCTAGTTTGAGCAAATGGGGGCCATCCATGATTTTCAGTTCTCTAAGTAATTCTGGATTTCCTCAAGAAGTAAGTCTCAATTAG 1119 0.4415 MQSQTSDMFVLSNSNTSHNGNYPISYSDQAFSCCRPFSIDSESNQASKQENNNCDLSSPPPLSFFHFPSPPFEDTEIFLQHHHDFLLHQTLSHDPEPQPFITVEGSIRSAEQIPRRKHGKKDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEINQLERENNKNKKKNHHTCCSSAGAKSAASTSECEEGVSSLDEVVVSGNQEPQEVVPKVVKRKKIKHSRKSAFHPLAKECRKKARERARERTKEKMRNRGLVDDSKQCREDINHDLTQLGSWNPFGTGEQCGTKSRTVNPSLDVLTEAKKGSHPAKEHLGTVDAMAHDDALASLSKWGPSMIFSSLSNSGFPQEVSLN* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0605 372 Coils Coil 161 188 - -
Apr9g0605 372 Pfam TCP family transcription factor 119 272 IPR017887 -
Apr9g0605 372 ProSiteProfiles TCP domain profile. 120 178 IPR017887 -
Apr9g0605 372 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 29 358 IPR005333 GO:0003700
Apr9g0605 372 ProSiteProfiles R domain profile. 252 269 IPR017888 -
Apr9g0605 372 PANTHER TRANSCRIPTION FACTOR TCP18 29 358 - -
Apr9g0605 372 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0605 Apr-Chr9 9252346 9253837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0605 85 266 TCP Transcription Factor Family AT3G18550 44.118 2.39e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr9g0605 TCP 1.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0605 - - pvu:PHAVU_009G200600g 366.311