Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0556 ATGGCAACAACAACGGCTATTTTTCTGTGGTTCCTCGGCGTGACAACCTTAACATGCGGCGCCACCATGTCGGAGATGGAAGCCTTAACAGCGTTCAAAACAAAACTCGACGACCCACTTGGCGCATTGGAAGGGTGGGACCCATCCACGCCATCGGCTCCATGTGACTGGCGTGGCATTCTCTGTTACCAAAACCGAGTTTTCGAACTCCGTTTGCCTCGTCTGCAACTCAGTGGTCCACTTAGTGACTCGCTCTCGAATTTGTCTCAACTCCGCAAACTAAGCCTCCATTCGAACAACTTCAACAACTCTATCCCTCACTCGCTTTCACATTGTTCCCTTTTACGTGCAATTTACCTTCACAACAACTCTCTCAGTGGAAAACTTCCCTCATCACTTCTCAACCTCACAAACCTTCAAGTTCTCAACGTTGCTTATAACTCTCTCTCCGGTTCTGTCACCGACAACATATCAAATTCTCTACGGTTCCTAGATTTGTCTTCAAACGCTTTCTCTGGTTACATGCCGGGTAATTTTTCTTCCAGCTCTCAGCTAAAGCTGATTAACTTGTCTTATAATCGTTTCAATGGTGGAATACCCGTCACCGTTGGAGCGTTGGAAAAGCTTGAGTATCTGTGGTTAGACTCTAACATGCTTCAGGGGACTCTGCCTTCGGCTCTTGCGAATTGCACCTCGCTGATTCATCTAAGTGCTGTGGATAATGCTCTTACTGGGTTGATACCTTCTTCTACGGGAAACATGGGGCAGCTTCAAGTTTTGTCTTTGATGCAGAATCGGTTCTCGGGATTGGTACCCTTTTCATTGCTTTGCAATGTGCACTTGAGGATTGTTCAACTTGGCTTCAATGCGCTCACGGGCATTCCTGAGCTAAAGAATCAAAATTGCGTTAGTTTCTTGGAGGTTTTGGACCTTAAAGAGAATCACATTCGCACTGCAATGACTGCATTGTGGTTTAATGCTACCACGTTAAGGGTTCTAGATCTTTCTGGAAACTCTTTGTATGGTGTGTTGCCGGTTGATATTGGGAATCTCTTGGGGTTAGAGGAGCTTAGGCTGGCTAGGAATTCATTATCTGGAAGAGTTCCTTCCGAGATTGTTGAATGTAGGTTGTTGAAGGTTCTTGATCTTGAGGGGAATAGGTTTTCTGGTTTGGTTCCTTCTTTTCTTGGTGAAATAAGGAGTCTCAAGATGTTATCTCTTGGGGGGAACATGTTTACTGGTTCCGTTCCCAAGAGTTATGGAACTCTTTCTGAGTTAGAGACGTTGGATTTAAGCAATAATATGCTGACAGGGATGATACCCCAAGAGATCATGAAATTAGGCAACATGAGTGTTTTGAATCTTAGCAATAACAGGTTTTCAGACCAAGTTTTAGCTGATATTGGGAATATGAATATGATGATAGCTTTGGAGGTTCTTAATTTGAGCCAGTGTGGGTTTTCAGGAAGAGTTCCTGCTACTTTTGGTAATTTGATGAAACTAAAAGTGTTGGATTTTAGCAAGCAGAGGCTTTCAGGTGAGTTGCCAATTGAGCTTTTTGGATTGCCAAGCCTGGAGGTTCTTTCACTTCAAGAGAACCGTTTATCTGGTGCTCTTCCTGAGGGTTTAAGCAGTTTGGTTAGTTTAAGGTATCTCAATCTCTCATCCAATGCCTTTGTTGGCAACATTCCCACAACCTATGGATTTCTTCAGTCGTTAGTTGTTTTCTCAGTGTCAAACAATAGTGTTTCTGGTGAGATACCCACTGAGATTGGTAATTGTTCTCAACTTGAAGTGCTAGAGTTGCATTCAAATCGTTTGCATGCTACCATTCCAAGTGAAATCTCCCACCTTTCTCGTTTAAAGGAGCTTAATTTGGGAGATAATAGATTAACAAGAAACATCCCAAATGAAATTTCACTTTGTTCTGCTTTGACTTCACTCTCGTTGGATGCCAATCACTTGAATGGTCACATACCAGAATCCTTGTCAAAGCTCTCAAACCTGGTGGCATTGGATCTTTCTTCAAACCAACTCAACGGAGAAATTCCAGTTAATCTTTCACGCATTTCAAGTTTGAAGTATTTGAATCTATCCAATAATAATCTCGAGGGTGAGATTCCACAACTTCTTGGTTCTCGATTCAATGACCCTTCTGTGTTTGCCATGAACCAAGGGTTATGTGGAAAACCTTTACATAGAGAATGTGCAAATGTGAGAAGGAGAAGGAGAAAACGGTTGATAATATTCATAGGCGTGGCATTAGGCGGAACATTCTTTTTGTTGCTGTGTTGCTGTGGCTACATTTTCAGCTTATTAAGGTGGCGCACGAAGCTTAGAGAAGGGGTAACAACACAGAAAAAAAGAAGCCCCACTAGTGCAAGTTCAGGAGGAGATAAAGGAAGAGGGAGTAGTGAAAATGGAGGACCAAAACTAGTAATGTTCAACGGCAAAATCACTTATGCAGAGACATTAGAAGCAACGAGAAACTTTGATGAAGAAAACGTGTTAAGTAGGGGAAAACACGGTCTTGTGTTCAAAGCCTCATACCAAGATGGCATGGTTCTCTCCATTCGTCGTTTACACGATGGATTCATCAATGAGGCCACGTTCCGCAAAGAAGCAGAATCATTAGGCAAAGTGAAGCACCGAAATTTAACAGTTCTACGCGGTTACTATGCAGGATCACATGATGTGAGGCTCCTTGTTTACGACTACATGCCCAATGGGAACCTTGGAACACTGCTTCAAGAGGCTTCACAACAAGATGGGCACGTGCTGAATTGGCCAATGCGTCATCTCATAGCACTAGGAATTGCTCGTGGCTTGGCTTTCTTGCACTCGGTGCCAATAGTTCATGGTGACGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAAGCCCATTTATCTGAATTTGGGTTAGAAAAGTTAACCATAGCAACCCCATTTGAAGCATCATCATCATCGACACCAATTGGTTCATTAGGGTATGTGTCACCGGAAGCAGCATTGACCGGTCAAGCTACGAAGGAAGGTGACGTGTACAGTTATGGTATTGTGTTGTTGGAGATACTAACAGGGAAAAAAGCGGTGATGTTCACGCAAGATGAAGATATAGTGAAGTGGGTGAAGAAGCAATTGCAAAGAGGGGAAATTTCGGAGTTGTTGGAACCTGGGTTGTTCGATTTGGATCCTGAGTCTTCCGAATGGGAAGAGTTTTTGTTGGGTATCAAAGTGGGTCTTCTTTGTACGACACCTGATCCTCTTCATCGACCATCCATGAACGATGTCGTTTTCATGCTCCAAGGTTGTCGTGTCGGACCCGAGATCCCTTCTTCTGCTGATCTCACAACACTACCTTCCCCTGTTTGA 3378 0.4337 MATTTAIFLWFLGVTTLTCGATMSEMEALTAFKTKLDDPLGALEGWDPSTPSAPCDWRGILCYQNRVFELRLPRLQLSGPLSDSLSNLSQLRKLSLHSNNFNNSIPHSLSHCSLLRAIYLHNNSLSGKLPSSLLNLTNLQVLNVAYNSLSGSVTDNISNSLRFLDLSSNAFSGYMPGNFSSSSQLKLINLSYNRFNGGIPVTVGALEKLEYLWLDSNMLQGTLPSALANCTSLIHLSAVDNALTGLIPSSTGNMGQLQVLSLMQNRFSGLVPFSLLCNVHLRIVQLGFNALTGIPELKNQNCVSFLEVLDLKENHIRTAMTALWFNATTLRVLDLSGNSLYGVLPVDIGNLLGLEELRLARNSLSGRVPSEIVECRLLKVLDLEGNRFSGLVPSFLGEIRSLKMLSLGGNMFTGSVPKSYGTLSELETLDLSNNMLTGMIPQEIMKLGNMSVLNLSNNRFSDQVLADIGNMNMMIALEVLNLSQCGFSGRVPATFGNLMKLKVLDFSKQRLSGELPIELFGLPSLEVLSLQENRLSGALPEGLSSLVSLRYLNLSSNAFVGNIPTTYGFLQSLVVFSVSNNSVSGEIPTEIGNCSQLEVLELHSNRLHATIPSEISHLSRLKELNLGDNRLTRNIPNEISLCSALTSLSLDANHLNGHIPESLSKLSNLVALDLSSNQLNGEIPVNLSRISSLKYLNLSNNNLEGEIPQLLGSRFNDPSVFAMNQGLCGKPLHRECANVRRRRRKRLIIFIGVALGGTFFLLLCCCGYIFSLLRWRTKLREGVTTQKKRSPTSASSGGDKGRGSSENGGPKLVMFNGKITYAETLEATRNFDEENVLSRGKHGLVFKASYQDGMVLSIRRLHDGFINEATFRKEAESLGKVKHRNLTVLRGYYAGSHDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLEKLTIATPFEASSSSTPIGSLGYVSPEAALTGQATKEGDVYSYGIVLLEILTGKKAVMFTQDEDIVKWVKKQLQRGEISELLEPGLFDLDPESSEWEEFLLGIKVGLLCTTPDPLHRPSMNDVVFMLQGCRVGPEIPSSADLTTLPSPV* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0556 1125 Pfam Leucine rich repeat 520 558 IPR001611 GO:0005515
Apr9g0556 1125 Pfam Leucine rich repeat 596 655 IPR001611 GO:0005515
Apr9g0556 1125 Pfam Leucine rich repeat 400 460 IPR001611 GO:0005515
Apr9g0556 1125 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Apr9g0556 1125 Gene3D Ribonuclease Inhibitor 475 739 IPR032675 -
Apr9g0556 1125 MobiDBLite consensus disorder prediction 786 802 - -
Apr9g0556 1125 Pfam Leucine Rich Repeat 477 498 IPR001611 GO:0005515
Apr9g0556 1125 Pfam Leucine Rich Repeat 692 711 IPR001611 GO:0005515
Apr9g0556 1125 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1118 - -
Apr9g0556 1125 Gene3D Ribonuclease Inhibitor 22 181 IPR032675 -
Apr9g0556 1125 Gene3D Ribonuclease Inhibitor 182 251 IPR032675 -
Apr9g0556 1125 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Apr9g0556 1125 SMART serkin_6 831 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0556 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 951 963 IPR008271 GO:0004672|GO:0006468
Apr9g0556 1125 Gene3D Phosphorylase Kinase; domain 1 805 906 - -
Apr9g0556 1125 SUPERFAMILY L domain-like 304 513 - -
Apr9g0556 1125 MobiDBLite consensus disorder prediction 784 811 - -
Apr9g0556 1125 PRINTS Leucine-rich repeat signature 426 439 - -
Apr9g0556 1125 PRINTS Leucine-rich repeat signature 666 679 - -
Apr9g0556 1125 Pfam Protein kinase domain 833 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0556 1125 SUPERFAMILY L domain-like 475 732 - -
Apr9g0556 1125 ProSiteProfiles Protein kinase domain profile. 831 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr9g0556 1125 SUPERFAMILY L domain-like 21 321 - -
Apr9g0556 1125 ProSiteProfiles Leucine-rich repeat profile. 692 714 IPR001611 GO:0005515
Apr9g0556 1125 ProSiteProfiles Leucine-rich repeat profile. 620 642 IPR001611 GO:0005515
Apr9g0556 1125 PANTHER LRR RECEPTOR-LIKE KINASE 17 1118 - -
Apr9g0556 1125 SMART LRR_typ_2 423 446 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 303 326 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 136 160 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 351 375 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 690 714 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 618 642 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 522 546 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 666 689 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 254 277 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 88 112 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 206 229 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 447 471 IPR003591 -
Apr9g0556 1125 SMART LRR_typ_2 570 594 IPR003591 -
Apr9g0556 1125 Gene3D Transferase(Phosphotransferase) domain 1 907 1111 - -
Apr9g0556 1125 SUPERFAMILY Protein kinase-like (PK-like) 811 1113 IPR011009 -
Apr9g0556 1125 Gene3D Ribonuclease Inhibitor 252 474 IPR032675 -
Apr9g0556 1125 SMART LRR_sd22_2 206 238 - -
Apr9g0556 1125 SMART LRR_sd22_2 666 689 - -
Apr9g0556 1125 SMART LRR_sd22_2 594 617 - -
Apr9g0556 1125 SMART LRR_sd22_2 618 637 - -
Apr9g0556 1125 SMART LRR_sd22_2 522 545 - -
Apr9g0556 1125 SMART LRR_sd22_2 423 457 - -
Apr9g0556 1125 SMART LRR_sd22_2 136 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0556 Apr-Chr9 7865023 7868400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0556 1 1125 Receptor kinase-like Gene Family AT1G75640 62.368 0.0 1306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Apr9g0556 Pkinase 7.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0556 - - gmx:100784917 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0556 9 7865023 7868400 Apr9g0556 9 7865023 7868400 ECH