Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0552 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAGGCAGAAGAAGAAGAGGAAAGAGAAGACAACAACAACAACAGTAGCGGTCAATTCTTGTTCAGGAACGAGGAGATCTATAACAAAGGATTTGAGATATGGCCACAGACACAGTCCTCGTACCACCACAACTTGAACAACTACTACTCCTTGGGGGTGGGTCCTAGTCGCAGGAACAACAACAACTCCAACGTCGTAAACGACGACGTTTCTGTCTCTTTCTCTGATGAGTCAAATCGGTTTGGGTTTACGGTGATGAGGTCCGGAAGCATAGGTGGCGGCATGAACTGTCAGGATTGCGGGAACCAAGCTAAGAAAGACTGTGCACACCTCAGATGCAGAACTTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGTCGTGAACGACAGCAACAACTCTCTGTGTTGCAGCAGCAACAACAACACTTTCGTGGAGATCATTCTAAACGACATAGAGAACCTGAAGGTGCTGCTGCTTCTGGTTCTCTTGCTTGCGCTCCTGTTCCTATCACCACCACAGGGTTGGAGCTGGGGCAATTCCCACCAGAACTTAACTCTCCGGCAATGTTTCGGTGTGTGAAAGTGAGTGCAATGGACGCACCGGATGAGCGTTACGCGTATCAAACGGCTGTGAACATAGGAGGACATGTGTTCAGGGGAATTCTCTACGATCAAGGAGTTGATAGTCCTTACACGAGTGCAGGTGGTGAGGGTTCTTCGGGTGGCGGTGAAGCTCAGCCACTTAGTCTCATATCTGCCACAACTACCGCTACATCAAGTGGAAACCCTTTTGACCCTTCACTCTACACGGCTCCGTTGAATGCTTACATGGCCGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 939 0.5016 MAGFFSLGGRHNKAEEEEEREDNNNNSSGQFLFRNEEIYNKGFEIWPQTQSSYHHNLNNYYSLGVGPSRRNNNNSNVVNDDVSVSFSDESNRFGFTVMRSGSIGGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSVLQQQQQHFRGDHSKRHREPEGAAASGSLACAPVPITTTGLELGQFPPELNSPAMFRCVKVSAMDAPDERYAYQTAVNIGGHVFRGILYDQGVDSPYTSAGGEGSSGGGEAQPLSLISATTTATSSGNPFDPSLYTAPLNAYMAGTQFFPPPRS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0552 312 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 203 251 IPR006511 -
Apr9g0552 312 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 310 IPR007818 GO:0003700|GO:0006355
Apr9g0552 312 MobiDBLite consensus disorder prediction 1 31 - -
Apr9g0552 312 MobiDBLite consensus disorder prediction 164 184 - -
Apr9g0552 312 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 310 - -
Apr9g0552 312 MobiDBLite consensus disorder prediction 10 24 - -
Apr9g0552 312 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Apr9g0552 312 Pfam Domain of unknown function (DUF702) 106 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0552 Apr-Chr9 7794307 7795838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0552 1 311 C2H2 Transcription Factor Family AT1G19790 46.089 3.58e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Apr9g0552 DUF702 5.9e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0552 - - gmx:100794846 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0552 9 7794307 7795838 Apr5g1796 5 21264705 21265657 ECH
Apr9g0552 9 7794307 7795838 Apr9g0552 9 7794307 7795838 ECH
Apr9g0552 9 7794307 7795838 Apr5g1796 5 21264705 21265657 PCT