Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0495 ATGACCATTCCCATATCTAAATTCGCATTTTGGGTTTATCGAAACTACCTTCTTATCATCCTCAACCCCACCCAAAAGAAGCGAAACCTTCCTGGAAGACCAGATCCAGATGCTGAGGTGATTGCTTTGTCGCCAAAAACACTGTTGGCAACGAATCGTTTCGTGTGTGAGATCTGCAATAAAGGGTTCCAACGTGATCAGAATCTGCAACTTCATCGGCGAGGGCACAACTTGCCATGGAAGCTTCGGCAAGGAAAGGGGAAGGAAGCACGGAAGAAAGTGTATGTGTGCCCTGAGCCTTCTTGCGTTCACAACAAGCCTTGCAGGGCGCTCGGTGACCTCACCGGTATAAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGTCTTGCCAACGTTGCGCCAAGAAATACGCTGTTCAATCCGATTGGAAGGCTCATATGAAGACCTGTGGAATCAGAGAGTATAGATGTCACTGTGGCAACTTTTTCTCTAGGAGGGACAAATTCATCATGCACAAAGCATTTTGCGATGCCTTAGCGAATGAGGGTGCCCTACCCACTATTGGTGGTGGTGATGAGTCGGAGGAGAGGAATTCTAATAGTAAGAGGAATGTTCCTTTGGCTTCTTCGCCGCCACTTACTCCGTCAATGTCTTTGGTGTCTGCAGCCATGTCCGTTCAGAGCTCAGGAATTTTGGAAAATCCAATGAACAAGGGTGCAACGGGCACCTCTTCCACTTCAACCAGTATCAGAGTTTTTGCAAGCATATTTGCATCCTCAACACTGTGTTGCTCCAAATCATCATCAATAACATTCTCCAATCACATGACAGCCTCATCAACGGCTACACCTATCCCAACATGCCTTTCTCTCTCCAAGAGTGAATCTTCCCACTACACTTCATCTTCACAAGCACCTGCGTTGTCTGCTACTGCGTTGCTCCAAAAAGCAGCTCAAATGGGTGCTGCAGCATCAAATGCATCGTTGCGGCTTCAGAGTTTAGGCTTAGCAACAACATCATCTTCCTCTCCTGAAGATGAGACTATTAGTGCAATGTTACATTGGAATATTAAACATGCAAAGCAACATGCAAAGCAAGATAATAATCATTCGGTGCCAAATTTAATGGTTGACTCTCAGACTCAACCATTGACTCGTGATCTTCTTGGTCTAAGCGTCGGTGGCAACGCTAGTCTTTCTGCTTTGTTCCCTTCTTTTGGAGAGAGCTTCGATGCATCAGCAAAGCACTGCTGA 1260 0.4619 MTIPISKFAFWVYRNYLLIILNPTQKKRNLPGRPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQGKGKEARKKVYVCPEPSCVHNKPCRALGDLTGIKKHFCRKHGEKKWSCQRCAKKYAVQSDWKAHMKTCGIREYRCHCGNFFSRRDKFIMHKAFCDALANEGALPTIGGGDESEERNSNSKRNVPLASSPPLTPSMSLVSAAMSVQSSGILENPMNKGATGTSSTSTSIRVFASIFASSTLCCSKSSSITFSNHMTASSTATPIPTCLSLSKSESSHYTSSSQAPALSATALLQKAAQMGAAASNASLRLQSLGLATTSSSSPEDETISAMLHWNIKHAKQHAKQDNNHSVPNLMVDSQTQPLTRDLLGLSVGGNASLSALFPSFGESFDASAKHC* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0495 419 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Apr9g0495 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Apr9g0495 419 MobiDBLite consensus disorder prediction 189 216 - -
Apr9g0495 419 SMART c2h2final6 95 125 IPR013087 -
Apr9g0495 419 SMART c2h2final6 130 150 IPR013087 -
Apr9g0495 419 SMART c2h2final6 54 76 IPR013087 -
Apr9g0495 419 Gene3D Classic Zinc Finger 52 152 - -
Apr9g0495 419 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 409 - -
Apr9g0495 419 SUPERFAMILY beta-beta-alpha zinc fingers 53 151 IPR036236 -
Apr9g0495 419 Pfam Zinc-finger of C2H2 type 54 76 - -
Apr9g0495 419 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 23 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0495 Apr-Chr9 6937266 6943919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0495 25 345 IDZ Gene Family AT3G50700 55.425 1.19e-112 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0495 zf-met 0.0029 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0495 K25869 - gmx:100818095 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0495 9 6937266 6943919 Apr9g0495 9 6937266 6943919 ECH