Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0480 ATGTCAAATATCCCCTCCTACTCAAGCAACAATAATAAGAACGATGCTGGCAATTTTGAGTGCAACATTTGCTTTGACTTAGCACAAGACCCTATAATTACTTTATGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACAAGAATGCCCGGTGTGCAAGGCACTCATTGAGGAGGCCAAGTTGGTTCCCTTGTATGGTAGAGGAAAAACATCAACTGACCCGAGATCAAAGTCTATTCCTGGTGTTAAAATCCCACATCGTCCTGCGGGTCAGAGACCTGAAACTGCTCCTCCTCCAGAACCAAATCCTTTTTCTCAACCTGGGTTTGGATTCACAGGTGGATTGGGAGGGTTTGCTCCTGCAGCCACGACAAGATTTGGGAACTTTACATTGTCAGCAGCAATTGGTGGTTTTATACCATCTTTATTTAACTTTCAGTTGCATGGGTTTCATGATGGAACCATGTATGGTGGAGCTGCTGGGTTTCCTTATGGGTTTTCATATCATAATGGTCATTTTCATAGATATCCTCTACAAGCAGGTCAAGGGCAGCAAGATTATTATCTAAAGAGGCTGCTGGTGTTTGTTATTTTCTGTGTCGTTCTTGCTTTTATTTGGCAATAG 651 0.4286 MSNIPSYSSNNNKNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSQECPVCKALIEEAKLVPLYGRGKTSTDPRSKSIPGVKIPHRPAGQRPETAPPPEPNPFSQPGFGFTGGLGGFAPAATTRFGNFTLSAAIGGFIPSLFNFQLHGFHDGTMYGGAAGFPYGFSYHNGHFHRYPLQAGQGQQDYYLKRLLVFVIFCVVLAFIWQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0480 216 SMART ring_2 21 61 IPR001841 -
Apr9g0480 216 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Apr9g0480 216 SUPERFAMILY RING/U-box 18 74 - -
Apr9g0480 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 75 IPR013083 -
Apr9g0480 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 216 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr9g0480 216 Pfam Zinc finger, C3HC4 type (RING finger) 19 67 - -
Apr9g0480 216 PANTHER OS12G0636000 PROTEIN 5 216 - -
Apr9g0480 216 MobiDBLite consensus disorder prediction 76 112 - -
Apr9g0480 216 CDD RING-HC_AtRMA_like 19 63 - -
Apr9g0480 216 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0480 Apr-Chr9 6753476 6755897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0480 1 199 C3H Transcription Factor Family AT1G19310 63.158 1.75e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0480 K10666 - gmx:100527488 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0480 9 6753476 6755897 Apr9g0480 9 6753476 6755897 ECH