Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0462 ATGGGTAGTTCGAATTGCAATGGTTGCAGATCGTGGGTGGATGATATTTACTGGACCCATTTTCAGTTCCTCCATTTTGTGCAATTTCTCCGTGCTGGATATGATCAAGGCCTTGCACTTCCAAAAGCATTTTCAGATAATTTAAAGAAGAAACTGCCAGAAAATGTGTTCCTTAAAGGTCCTGGTGGCGTTGTGTGGAATGTAGGACTGACAACTAGAGATGATACCTTGTACTTCACGCATGGTTGGCAACAATTTGTGAAAGATCATGCTTTGAAAGAGAATGATTTCCTGGTCTTTAAGTACAATGGTGAATCTCAGTTTGAAGTTTTAATATTTGATGGGGGGAGCTTCTGTGAGAAGGCAGGTTCTTATTTTGTTCGAAAATGTGGGCACACTGAAGTAACTGAACAAGGGGGTGGATGTCTTGAAAACAGAAGGCACAGTGATAATTCTCAGGAGGAAGTTAATACCCCTTCAAATGCTGATGTTGAATGTGCTTCACCTGACAAATCTATGCATATCAACGGTACAGAGGAGCCGGTAGTTGTGCCTTCTCAAAGTCCTAGTGAGAAGATTTTAAATGCTGGTGTTGAATCTGCTTGCCACGAGCAGTTTATGGCTAATGGAGTCACCAAGTCAGAATCTGTTCCCCCCAAACCTACCAATAAAAGGATCAGGAACCATGTTTCTGCTGTCAAGCGCATTCAGACTAAGCGGAGAGGAAGACCACCAAAAACTTCTAGTTCTCATGAGAGAACACTTAACTTGTTGGCTGAATCTGAACCAGTTTCTGTGGGTTCAAGTGGGAAATCTGAAATATTTACCTCAAATAGAAGGCCTGTCACAGAAAATGAGATTAAAAATACCCTCCAGTTGGCCCAGGCAGCATGTACCAACAATAGTTTGCTCATAGTAATGCGACCGACGCATGTGTACAAGAGATTCTACTTGTCACTCCAACTTAAGTGGATGGCACAACTTACACCCTCAGGATCTCAAGAACTGATTTTACGCATGGGAATGGGTGAATGGCTTGCCAAATTCACTGTCCATAACTGTCGCAATAGTGGAGGACTCACACGTGGGTGGAAACAATTTGCCTTGGATAATAACCTTGAAGAGTTTGATGTCTGTGTGTTTGAACCAGCTGGCCACATGAACAATGTTTTGGTTTTGGATGTGACCATTTTTAGAGTTGTTGAGGAAATTGTTCCTGTTACTGCAGCTACTAGTTCAGGAGGAAAAAAGGGTAGGAAACCAGTAACCAAGGCATACACACAAATTTAG 1290 0.4225 MGSSNCNGCRSWVDDIYWTHFQFLHFVQFLRAGYDQGLALPKAFSDNLKKKLPENVFLKGPGGVVWNVGLTTRDDTLYFTHGWQQFVKDHALKENDFLVFKYNGESQFEVLIFDGGSFCEKAGSYFVRKCGHTEVTEQGGGCLENRRHSDNSQEEVNTPSNADVECASPDKSMHINGTEEPVVVPSQSPSEKILNAGVESACHEQFMANGVTKSESVPPKPTNKRIRNHVSAVKRIQTKRRGRPPKTSSSHERTLNLLAESEPVSVGSSGKSEIFTSNRRPVTENEIKNTLQLAQAACTNNSLLIVMRPTHVYKRFYLSLQLKWMAQLTPSGSQELILRMGMGEWLAKFTVHNCRNSGGLTRGWKQFALDNNLEEFDVCVFEPAGHMNNVLVLDVTIFRVVEEIVPVTAATSSGGKKGRKPVTKAYTQI* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0462 429 CDD B3_DNA 25 114 IPR003340 GO:0003677
Apr9g0462 429 MobiDBLite consensus disorder prediction 169 188 - -
Apr9g0462 429 SMART B3_2 303 401 IPR003340 GO:0003677
Apr9g0462 429 SMART B3_2 26 116 IPR003340 GO:0003677
Apr9g0462 429 CDD B3_DNA 306 399 IPR003340 GO:0003677
Apr9g0462 429 SUPERFAMILY DNA-binding pseudobarrel domain 302 389 IPR015300 -
Apr9g0462 429 Gene3D - 20 119 IPR015300 -
Apr9g0462 429 Gene3D - 281 403 IPR015300 -
Apr9g0462 429 MobiDBLite consensus disorder prediction 235 256 - -
Apr9g0462 429 MobiDBLite consensus disorder prediction 137 162 - -
Apr9g0462 429 SUPERFAMILY DNA-binding pseudobarrel domain 21 114 IPR015300 -
Apr9g0462 429 Pfam B3 DNA binding domain 305 392 IPR003340 GO:0003677
Apr9g0462 429 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Apr9g0462 429 ProSiteProfiles B3 DNA-binding domain profile. 23 116 IPR003340 GO:0003677
Apr9g0462 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 5 173 IPR044837 -
Apr9g0462 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 270 411 IPR044837 -
Apr9g0462 429 ProSiteProfiles B3 DNA-binding domain profile. 303 401 IPR003340 GO:0003677
Apr9g0462 429 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 173 - -
Apr9g0462 429 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 270 411 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0462 5 399 REM Transcription Factor Family AT4G33280 34.458 1.45e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr9g0462 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0462 - - gmx:100777709 545.428