Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr9g0419 | ATGTCGAGGACGCTGGTGCAGCCCATAGGGCAAAAGAGGTTAACGAACGTGGCAGTGGTGCGTCTGAAGAAGCACGGGATGCGCTTCGAGATCGCTTGCTACCCTAACACCGTCCTCTCATGGCGTTCCGGCGTGGAAAAGGACATTGATGAAGTGCTGCAGTCCCACACCGTTTACTCCAACGTCTCCAAAGGCGTTCTCGCCAAGTCCAAAGATTTAACCGCAGCTTTTGGCACCGATGACCACTCCAAAATATGCTTAGAGATTTTAAAGAAAGGGGAGCTTCAGGTAGCTGGTAAAGAAAGGGAATCGATGCTATCGAATCAGTTTAGGGACATTGCGACCATAGTGATGCATAAGACTTACAATCCCGAGACTCAGCGCCCTTACACTATCAGCATGATCGAACGCCTCATGCGCGAAATCCATTTCGCCGTTGATCCTCACAGCAACTCCAAGAAGCAGGCTTTGGAGTTAATTCAAGAGCTTCAAAAGCACTTCCCTATAAAACGGTGCCCGTTGAGAATACGAGCTACTGCTCCTGAGGATCAAGCGCCTCAGCTTTTAGAAAAGCTCAGTATGTGGGATGCCACACTTATTTCCAAAGAAGGATCTTCTGCTCAGTTATCTGTGATTTTTGAATTGGAGCCTGGTCTATATAAGGATTGTCATGATTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCGCACACTCTTTATGTTGAGGGGGATACCCATGTGGACCAATACAATGATTTTGAGGATATGCCTGCATTGTTGCCCAAAGAAACTCCTGATTCTGTGCTTGAATTGAATGAGAAACTTCAAAAGCAAACAATTTCATCTAGGAGTAGGCCTACTGAGGGACAACAACAAAAGCAAAACAAGTGCAACACATGTAATGTTTCTTTTGAAGACTCCAAACTGTATAGGGAACATCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACCGAGGAAGAGTGCATGGCAGACATGGAATTGGGCGACTCAAAATCTGATTTGAAGGATTATTCATTTTAA | 1080 | 0.4509 | MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLAKSKDLTAAFGTDDHSKICLEILKKGELQVAGKERESMLSNQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPHSNSKKQALELIQELQKHFPIKRCPLRIRATAPEDQAPQLLEKLSMWDATLISKEGSSAQLSVIFELEPGLYKDCHDFVMNKMHGRFEVLAHTLYVEGDTHVDQYNDFEDMPALLPKETPDSVLELNEKLQKQTISSRSRPTEGQQQKQNKCNTCNVSFEDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMELGDSKSDLKDYSF* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr9g0419 | 359 | MobiDBLite | consensus disorder prediction | 318 | 359 | - | - | |
| Apr9g0419 | 359 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
| Apr9g0419 | 359 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
| Apr9g0419 | 359 | Gene3D | - | 174 | 251 | - | - | |
| Apr9g0419 | 359 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
| Apr9g0419 | 359 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
| Apr9g0419 | 359 | MobiDBLite | consensus disorder prediction | 344 | 359 | - | - | |
| Apr9g0419 | 359 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 300 | 322 | IPR013087 | - | |
| Apr9g0419 | 359 | PANTHER | BNAANNG06530D PROTEIN | 1 | 359 | - | - | |
| Apr9g0419 | 359 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254 | |
| Apr9g0419 | 359 | Gene3D | - | 100 | 172 | IPR037188 | - | |
| Apr9g0419 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 293 | 345 | IPR036236 | - | |
| Apr9g0419 | 359 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 359 | IPR039100 | - | |
| Apr9g0419 | 359 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 233 | IPR002140 | GO:0042256 | |
| Apr9g0419 | 359 | Gene3D | - | 1 | 96 | IPR036786 | - | |
| Apr9g0419 | 359 | MobiDBLite | consensus disorder prediction | 279 | 299 | - | - | |
| Apr9g0419 | 359 | Gene3D | Classic Zinc Finger | 290 | 348 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr9g0419 | Apr-Chr9 | 5806414 | 5808776 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr9g0419 | 27 | 359 | C2H2 Transcription Factor Family | AT1G43860 | 59.710 | 2.32e-147 | 417 |
Transcription factors information