Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0415 ATGGTGATGGTGATGATGATGCAACATTTTCCTGAAGCCAACAACTCGGTGACAAATTTTCAACCACAAGAGTTCTCTGAATCAACCATCACACACAATAATAACACCACATCATTGCCACTAGCAAATTCAATTAATAACACTCCAAGTTCCATACCATGGTCATCATTCACACAACACTCACCATCAACCACAACCTCTTTCTCTAACATTACCCCTAATTCATTAACCACTGAGAAACCCAACTTGATGAGGGAAATGATATTCAGAATAGCAGCTATGCAACCGATAAAGATAGAACCTGAGTGGGTGAAGGCACCAAAGAGAAGGAACGTGAAGATTTCTAAGGATCCTCAAAGTGTGGCTGCACGACACAGAAGAGAAAGGATCAGTGAGAGGATAAGGATATTGCAGAGATTGGTCCCTGGAGGAACCAAAATGGACACTGCTTCTATGTTGGATGAAGCAATTCACTACCTTAAATTTCTCAAAACCCAGGTTCAGTCACTTGAACGTGTCGCTGCTACTAATACTGGGCTTGGATTCCCTGTGTCATTTTTGTCTAGTGGGAGTACTGTAACTACTTCCACTGCCACCAATTATGAAGGTTCTCGTGTTCAAAGTGTTGAGTATTTCAGTGATGCGTTATGA 651 0.4163 MVMVMMMQHFPEANNSVTNFQPQEFSESTITHNNNTTSLPLANSINNTPSSIPWSSFTQHSPSTTTSFSNITPNSLTTEKPNLMREMIFRIAAMQPIKIEPEWVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYLKFLKTQVQSLERVAATNTGLGFPVSFLSSGSTVTTSTATNYEGSRVQSVEYFSDAL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0415 216 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 19 203 - -
Apr9g0415 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 173 IPR036638 GO:0046983
Apr9g0415 216 SMART finulus 120 169 IPR011598 GO:0046983
Apr9g0415 216 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 203 IPR045843 GO:0003700|GO:0006355
Apr9g0415 216 Pfam Helix-loop-helix DNA-binding domain 124 163 IPR011598 GO:0046983
Apr9g0415 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Apr9g0415 216 Gene3D - 113 178 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0415 Apr-Chr9 5755340 5755990 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0415 45 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 62.500 6.59e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr9g0415 HLH 6.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0415 - - aprc:113874134 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0415 9 5755340 5755990 Apr9g0415 9 5755340 5755990 ECH