Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0393 ATGAGTGGGAACTGGGAAGCCTACGATTTTACTCATTCTAGTTTATGTCCAGAGTATCATCTTCAACTCTTGCCATTAAATTGTATGTTGTTTTTAAAGAAAACAAAGATGGCACATCACCACTCAAAACCCCTTCAAGATTCTCTCTTCTGCTTAGAAGATCATTGGGAAGAAGAACAAGTTGTAGAAGATGATTACTACACGACAACAACAAACTCCTCCCCTGTGGTCTTGTTAGAACACGACCTCTTTTGGGACCATGAAGAATTAGCATCTCTTCTCTCCAAAGAACACCACAACAAACTATGTAACTGCCTCCAAAACAACCCAAGTTTGGCTTTAGCTCGCAAAGAAGCCATAGAGTGGATTCTAAAAGTGAATGCCCATTACTCCTTCTCTGCCCTCACCACAGTTCTTTCTGTCAACTACTTCGATAGGTTCCTTTTCAGCTTCAGCTTTCAGAATGAGAAACCTTGGCTCACACACCTAGCTGCTGTGGCTTGTCTCTCTCTAGCTGCTAAGGTTGAAGAGACCCATGTGCCCCTCTGTATAGACCTTCAAGTGGAGGAGAGTAGATACCTGTTTGAAGCAAAAACAGTTAAGAGAATGGAAATCTTGGTGCTTTCAACTCTTGGATGGAAGATGAATCCGGTAACACCTCTCTCCTTTCTTGATTATATCACAAGGAGACTTGGGTTAAAGGGTTATCTTTGCTGTGAATTCCTCAAGAGGTGTGAAGCTGTTCTTCTCTCTGTCTTTTCAGATTCCAGATTTATGAGTTATCTTCCTTCTGTGTTGGCAACTGCTACAATGATGCACGTCGTCAACATTGTGGAACCTCGTCTAGGAGTTGAATACCAAAATCAGCTCTTGGGTATTCTTGGAATCCACAAGGACAAGGTGGAAGAGTGCTATAAGCTGGTGTTGGAGATTGTGTCAGGGTACGATGACAAGGGTAAAACATTCAAGTTTGGCAAACGCAAGTTAGGGTCGGTTCCTTGGAGCCCAAATGGTGTAATGGATGGGTCATTTAGCTGTGATAGTACGAACGAGTCTTGGGAGTTAGGTGCATCGGTTCAATCTTCACCAGAGCCATTGTCCAAGAAGGCTAGGACTCAAGATCAGCTTCTATTGAACCATTCAAATTCAGATTTTCTCACCATTCCTCGCTAG 1173 0.4288 MSGNWEAYDFTHSSLCPEYHLQLLPLNCMLFLKKTKMAHHHSKPLQDSLFCLEDHWEEEQVVEDDYYTTTTNSSPVVLLEHDLFWDHEELASLLSKEHHNKLCNCLQNNPSLALARKEAIEWILKVNAHYSFSALTTVLSVNYFDRFLFSFSFQNEKPWLTHLAAVACLSLAAKVEETHVPLCIDLQVEESRYLFEAKTVKRMEILVLSTLGWKMNPVTPLSFLDYITRRLGLKGYLCCEFLKRCEAVLLSVFSDSRFMSYLPSVLATATMMHVVNIVEPRLGVEYQNQLLGILGIHKDKVEECYKLVLEIVSGYDDKGKTFKFGKRKLGSVPWSPNGVMDGSFSCDSTNESWELGASVQSSPEPLSKKARTQDQLLLNHSNSDFLTIPR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0393 390 Gene3D - 95 306 - -
Apr9g0393 390 CDD CYCLIN 116 208 IPR013763 -
Apr9g0393 390 Gene3D - 101 216 - -
Apr9g0393 390 SUPERFAMILY Cyclin-like 219 317 IPR036915 -
Apr9g0393 390 Pfam Cyclin, C-terminal domain 218 315 IPR004367 -
Apr9g0393 390 PANTHER CYCLIN D3.1 PROTEIN 66 370 - -
Apr9g0393 390 SMART Cyclin_C_2 218 337 IPR004367 -
Apr9g0393 390 PANTHER CYCLINS 66 370 IPR039361 -
Apr9g0393 390 Pfam Cyclin, N-terminal domain 102 216 IPR006671 -
Apr9g0393 390 SMART cyclin_7 121 209 IPR013763 -
Apr9g0393 390 SUPERFAMILY Cyclin-like 84 216 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0393 Apr-Chr9 5412460 5428171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0393 45 311 Core Cell Cycle Gene Families AT4G34160 52.434 1.49e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0393 K14505 - aprc:113874132 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0393 9 5412460 5428171 Apr3g0108 3 1892063 1893896 ECH
Apr9g0393 9 5412460 5428171 Apr7g0880 7 15824362 15826139 ECH
Apr9g0393 9 5412460 5428171 Apr8g2468 8 34690746 34692531 ECH
Apr9g0393 9 5412460 5428171 Apr9g0393 9 5412460 5428171 ECH
Apr9g0393 9 5412460 5428171 Apr5g1494 5 18901001 18902810 PCT