Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0386 ATGGAAAGAAACCAAGATGGCAGCGTGCGCCCCCAGCGCGAAGCCAAGAAGCGAGCCGCAGCTGCAATATGCGAACTACGTGGCACCGCTAAGAAGAAACGCGCCGTTTTGGGTGACCTCACCAACTTACCCAATGCCGATGCTCCGCCGGAGAAAACCGGTTCCTATACTCACAAGGAGAAAAAAAGAAAGCTCGTGAAACCGACGGAGACAGTAATCACGCCGGAGAAGTTAAATGAAACCCATTTGTGTGGACCCTACGTTTCTGATATTTACGACTACCTTCGAAGGATGGAGGTGGATCCTAGTAAACGACCGTTACATGATTATGTTCAGAAAGTTCAGAGGGATGTTAATGCTAACATGAGGGGTGTTTTGGTGGATTGGTTGGTGGAGGTTGCTGAGGAATATAGGCTTTCTTCCGACACGCTTTTTTTTTCTATTTCTTACATTGATAGGTTTTTGTCTTCGAATGTTTTAACGAGACATAAATTGCAATTACTCGGGGTATCTGCGATGCTCATTGCTTCAAAATATGAAGAAATTAAGCCACCTGAAGTGGAGGATTTTTGTTATATTACGGACAACACATACTCCAAGGAAGAGGTTGTGAATATGGAAGCTGATATATTGAAGTCCTTGAAATTTCAATTGGGAGGTCCTACAGTGATGACATTCCTAAGGAGATTCTCTAGTGTTGGTCAAGAGGGTGTTGATGCTTCTGATCTAAAGTTTGAGTTGCTTAGTTGCTTCCTTGCTGAACTCAGCTTGTTGGATTATAATTGTGTAAAGTTCTTGCCTTCTTTGGTAGCTGCATCTGTGGTATTTCTGGCGAGATTTATGTTAAGCCCAAAGACACATCCATGGAATTCAGCACTTTGTCAGCTCACTAGATATAAACCTACTGAATTAAAGGAATGTGTTCTATATATACATGACTTGTACCTCATTAGGAGAGGGGGCTCGTTGCATGCCGTTAGGGAAAAATACAAACAACATAAGTACAAATGCGTGGCAATAACACCATCTCCTCCTGAGATACCTCTTCTTTTTTTTGAATTTAGCGGGACAGATTCGTAG 1080 0.4269 MERNQDGSVRPQREAKKRAAAAICELRGTAKKKRAVLGDLTNLPNADAPPEKTGSYTHKEKKRKLVKPTETVITPEKLNETHLCGPYVSDIYDYLRRMEVDPSKRPLHDYVQKVQRDVNANMRGVLVDWLVEVAEEYRLSSDTLFFSISYIDRFLSSNVLTRHKLQLLGVSAMLIASKYEEIKPPEVEDFCYITDNTYSKEEVVNMEADILKSLKFQLGGPTVMTFLRRFSSVGQEGVDASDLKFELLSCFLAELSLLDYNCVKFLPSLVAASVVFLARFMLSPKTHPWNSALCQLTRYKPTELKECVLYIHDLYLIRRGGSLHAVREKYKQHKYKCVAITPSPPEIPLLFFEFSGTDS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0386 359 SMART Cyclin_C_2 221 344 IPR004367 -
Apr9g0386 359 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 21 355 - -
Apr9g0386 359 SUPERFAMILY Cyclin-like 221 346 IPR036915 -
Apr9g0386 359 PIRSF Cyclin_A_B_D_E 2 348 IPR039361 -
Apr9g0386 359 Gene3D - 106 219 - -
Apr9g0386 359 MobiDBLite consensus disorder prediction 41 63 - -
Apr9g0386 359 Pfam Cyclin, N-terminal domain 90 218 IPR006671 -
Apr9g0386 359 ProSitePatterns Cyclins signature. 123 154 IPR006671 -
Apr9g0386 359 Gene3D - 90 339 - -
Apr9g0386 359 SUPERFAMILY Cyclin-like 79 218 IPR036915 -
Apr9g0386 359 CDD CYCLIN 122 211 IPR013763 -
Apr9g0386 359 SMART cyclin_7 128 212 IPR013763 -
Apr9g0386 359 SMART cyclin_7 225 313 IPR013763 -
Apr9g0386 359 PANTHER CYCLINS 21 355 IPR039361 -
Apr9g0386 359 Pfam Cyclin, C-terminal domain 221 343 IPR004367 -
Apr9g0386 359 CDD CYCLIN 221 312 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0386 Apr-Chr9 5204422 5207050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0386 1 353 Core Cell Cycle Gene Families AT1G47230 56.474 4.52e-142 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0386 K06627 - gmx:100801988 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0386 9 5204422 5207050 Apr9g0386 9 5204422 5207050 ECH
Apr9g0386 9 5204422 5207050 Apr5g1483 5 18814454 18816598 PCT