Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0352 ATGATAGAAGGGTATGCAAAAATGCCTTTGTATAAGCCATCAAATGAGGATGTGAAGATTGAAGCTGTGTTGGGTCTAGAAACTGCCTTTAAAGGTGGTGTTTTGGTTGAGAAAATGGATCTGAAAGTGATGATTGAGGAGCTAGAGTCAATTGATGTTCCCTCTGTGTTCATTTGCCCAATCTCTCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGTCAAACCTATGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAACACTTGTCCCACAACAATGCAGGAGCTTTGGGACGATTCTGTCACTCCCAACAAGACCCTAAGCCACTTGATCCTCACTTGGTTCTCTCACAGGTACTTGGCCATGAAGAAGAAGCTTGAGGATGTGCAAGGAAGAGCCTTGGACCTCTTGGACACGCTCAAGAAGGTGAAGGGTCAAGCGAGAGTTCGAGCTCTTAAGGATCTGAGGCAACTTGTTGCATCTCATGTGTCTGCAAGGAAAAGAGTTGAAGAAAATGGTGGGATTGCCTTGGTTTCTTCTTTGTTGGGTCCTTTCACTTCACATGCTGTTGGGTCTGAAGCAGTTGGGATTATTGTGAATTTGGATTTGAGTTCAGAGTTGAAGAGAAATCTGATGCATCCAGCTAAGGTATCATTGTTAGTGGATATTATGAATGAGGGAACCATTGAGACAAAGATGAACTGTGCCAAATTGATTGAAATGTTGTTGAAGGAAGGGAATGAGACCCAGACAGAGATTGTCTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGCCTCATATTACTCAAGGCTATATGTTCCCATGAATCAGTTAGGAGCTCTGTGATAAGCCTTGGAGCAATTCCTCAATTGATTGAGCTTTTACCCTCTTTGAATAATGAGTGCTTAGAGATAGCACTCTACATTCTAGAAGTATTATCAACCCTTCCAGAAGGAAGAATGGCTCTCAAAGAATGTCCAAACATCATTCCCAATGTGGTCAAGTTGCTAATGAGGGTCTCAGAGAGTTGCACACAATTTGCATTGTCAATATTGTGGGCCATTTACAAGCTTGCACCTGAGGAATGTGCCTCACAGGCAGTGGAGGCTGGATTGGCAGCAAAACTACTATTAGTGATTCAGAGTGGTTGCAACCCAGTGCTGAAGCAAATGTCTTCTGAGTTTTTAAAATTGTGCAGTCTGAATTACTCTACTAGTATCTTGATTTCCAAGTGTATGCTCACCACAACAATACAATGA 1317 0.4267 MIEGYAKMPLYKPSNEDVKIEAVLGLETAFKGGVLVEKMDLKVMIEELESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNKTLSHLILTWFSHRYLAMKKKLEDVQGRALDLLDTLKKVKGQARVRALKDLRQLVASHVSARKRVEENGGIALVSSLLGPFTSHAVGSEAVGIIVNLDLSSELKRNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLKEGNETQTEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSHESVRSSVISLGAIPQLIELLPSLNNECLEIALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKLCSLNYSTSILISKCMLTTTIQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0352 438 Gene3D - 136 278 IPR011989 -
Apr9g0352 438 PANTHER WDSAM1 PROTEIN 30 437 IPR045185 GO:0061630
Apr9g0352 438 SUPERFAMILY ARM repeat 141 260 IPR016024 -
Apr9g0352 438 Pfam U-box domain 53 121 IPR003613 GO:0004842|GO:0016567
Apr9g0352 438 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Apr9g0352 438 CDD RING-Ubox_PUB 57 99 IPR045210 -
Apr9g0352 438 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Apr9g0352 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 30 437 - -
Apr9g0352 438 Gene3D - 279 431 IPR011989 -
Apr9g0352 438 SUPERFAMILY RING/U-box 47 121 - -
Apr9g0352 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 135 IPR013083 -
Apr9g0352 438 SUPERFAMILY ARM repeat 222 421 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0352 Apr-Chr9 4737768 4740292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0352 8 438 U-box Gene Family AT3G49810 62.138 0.0 548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0352 9 4737768 4740292 Apr9g0352 9 4737768 4740292 ECH