Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0342 ATGTTTGTTTATATAGATTGTCGCTCAACACTGGATTCTACAATTTCAATACATCACAACAGCGTTAGAGGTTCAACTTTGTTGACTTCTGCAAAAATGTCTAGTGCTGATAATGTCCTTGAAAGCACCCATGTTGTCGAAGAAAAGACGAGAGTGAAGGAAGAAATAGCTAACAATGAAGGGCAACAACAAAAGCAATCTCAAAGATTGGGTCCTGAAAGTATTAGGAGGAGGAAGATTTTTGTTGGAGGATTACCTTCAGGTATATCTGAAGAAGAGTTTCGTAAACACTTTGAAAGGTTTGGCACAATAACTGACGTGGTGGTAATGCAAGATAGTGTTACGGGTCGTCCTAGAGGATTTGGATTTGTCACATTTGATTCAGAAAAATCTGTAGAAGATGTTTTGGTAAAAACTTTTCATGACTTGAATGGCAAACAAGTGGAGGTCAAAAGGGTCGTTCCAAAAGTGGAGATTAATGTTTCCAGTGGCTTTGAAAATTCCAAAGTGTCTATGGAAAAATTTCCTAGTTTTGGTACCAAGGCCATTCAAGCCTCCACTACTTTTCCTTGGTATTATAATAATGAATTGTATGCACTAAACCCTTATGGTTATTGGGGCCTTATGGATGGATATAGAGGGAATGGAGGTGCTGTTCCTTATGATCCTTTTAGCAACATTTGGTATATGCCTTTGGTACCTGTTGCCAGGCCATTTCAACAACCTCTTGCTTATTGTTGCCCAAGTTATGCATTTGTTGGTGGATATGCTGGTCACTGA 780 0.3885 MFVYIDCRSTLDSTISIHHNSVRGSTLLTSAKMSSADNVLESTHVVEEKTRVKEEIANNEGQQQKQSQRLGPESIRRRKIFVGGLPSGISEEEFRKHFERFGTITDVVVMQDSVTGRPRGFGFVTFDSEKSVEDVLVKTFHDLNGKQVEVKRVVPKVEINVSSGFENSKVSMEKFPSFGTKAIQASTTFPWYYNNELYALNPYGYWGLMDGYRGNGGAVPYDPFSNIWYMPLVPVARPFQQPLAYCCPSYAFVGGYAGH* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0342 259 Gene3D - 40 166 IPR012677 -
Apr9g0342 259 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 20 229 - -
Apr9g0342 259 SMART rrm1_1 79 151 IPR000504 GO:0003723
Apr9g0342 259 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 20 229 - -
Apr9g0342 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 138 IPR000504 GO:0003723
Apr9g0342 259 SUPERFAMILY RNA-binding domain, RBD 72 160 IPR035979 GO:0003676
Apr9g0342 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 155 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0342 Apr-Chr9 4580098 4581194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0342 48 195 Eukaryotic Initiation Factors Gene Family AT2G36660 29.870 2.27e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0342 K14411 - gmx:100786665 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0342 9 4580098 4581194 Apr9g0342 9 4580098 4581194 ECH