Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0330 ATGGGTTTTCATGATACATCTACCACAGGGCTTCCACTTGGTCTCGGTCTTGGTCTTGGTCTTGGTCTTGGTTTCCATGATCAGTCAGAGAATTGCACGAAGGTTGATGATCACAAACAGAGAGAAAGTCATAAGAAAAAGGTGGATAAACCATCTAAATGTAACAACGCATACCCTTCTCTTACATTAGGACCACCTGAGGATGATGAACTGCATAATCAACAAAATACAAATACTGAATCCTATGAATATTTTCCTCCTCAAGATTCTTCTCCTAGCGCAGTATCTTCATTTTCCAACTCTTCTAGCATCAAGAGGGAACGAGATCAAGCTTTAGGTGAGGAATTTGAAGTAGAGGTAGAGAAAATTCCAACAAGGGTAGTTGGTGATGTTGATGAAGATGGTAACCCCAGGAAGAAACTTAGGCTCACCAAAGAACAATCCGCAGTGTTGGAGGAAAACTTCAAGGAGCATTCTACCCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAACCTGCGAGCGAGACAAGTCGAAGTGTGGTTTCAAAACAGGCGAGCCAGGACAAAACTTAAACAAACCGAGTCGGATTGTGAATTATTGAAGAACTGTTGCGATACTTTGACAGAAGAGAATAAGAGGCTGCAAAAAGAGTTGCAAGAACTTAAGTCAATGCAAACAACCCCTTTACCCTTTTACATGCAGATTCCAGCAGCCACACTTTCCATATGCCCTTCCTGTGAGAGAATTTGCGGTGGCAACAGTGACAGTGGCAATGGTTCCTCTCCCACAACAACATTGCTTATTGGCTCAAAGACCCATCATCACTTTTACAAAAGCAACTATGCATTCCCCCACTCATCATCTGCAGCATGCTAG 885 0.4271 MGFHDTSTTGLPLGLGLGLGLGLGFHDQSENCTKVDDHKQRESHKKKVDKPSKCNNAYPSLTLGPPEDDELHNQQNTNTESYEYFPPQDSSPSAVSSFSNSSSIKRERDQALGEEFEVEVEKIPTRVVGDVDEDGNPRKKLRLTKEQSAVLEENFKEHSTLNPKQKQELAMKLNLRARQVEVWFQNRRARTKLKQTESDCELLKNCCDTLTEENKRLQKELQELKSMQTTPLPFYMQIPAATLSICPSCERICGGNSDSGNGSSPTTTLLIGSKTHHHFYKSNYAFPHSSSAAC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0330 294 Coils Coil 193 230 - -
Apr9g0330 294 MobiDBLite consensus disorder prediction 34 110 - -
Apr9g0330 294 PANTHER - 11 292 - -
Apr9g0330 294 SUPERFAMILY Homeodomain-like 133 195 IPR009057 -
Apr9g0330 294 MobiDBLite consensus disorder prediction 34 52 - -
Apr9g0330 294 Gene3D - 130 200 - -
Apr9g0330 294 MobiDBLite consensus disorder prediction 69 106 - -
Apr9g0330 294 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Apr9g0330 294 SMART HOX_1 136 198 IPR001356 GO:0003677
Apr9g0330 294 Pfam Homeobox associated leucine zipper 194 227 IPR003106 GO:0006355|GO:0043565
Apr9g0330 294 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Apr9g0330 294 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Apr9g0330 294 CDD homeodomain 137 195 IPR001356 GO:0003677
Apr9g0330 294 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 11 292 - -
Apr9g0330 294 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0330 Apr-Chr9 4424185 4425578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0330 1 252 Homeobox Transcription Factor Family AT2G22800 52.549 3.47e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr9g0330 Homeodomain 3.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0330 K09338 - gmx:100797650 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0330 9 4424185 4425578 Apr9g0330 9 4424185 4425578 ECH