Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0329 ATGGAGGAATACACTAATAATAATCACCTGAGCGAAAATACAGGTCCAAGTCCAAGTCCAAGGCCAAATTTCTTGTACTCTTCAGGTACTGGTGGTGGCAATCATCATAATCATCATCACCACCATCACCACCATCAGTTTCCAATCAACACCTTTCATCTCCAATCGGGTGGATCAGATCACTGTTTTCAATCTGATCAGGTGGCACCACACCCGTCTGTGAAAACTGAAGCCAGCACTTCACAGCTTCACTCCCCGATTTTCCACTACCCTTTAATGAGAGGAACTCTTCACAACACTTCTACCACTATGCATCCCCAACAAGGAGGTAGCCCAACAAACTCTAGTGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCATCCTCAGTACTCTAATCTTTTAGATGCTTACATGGATTGCCAAAAGATAGGAGCTCCACCGGAAGTGGTGGCGCGTATGGTTGCGGCGAAGCAAGAGTTTGAGGCGCGGCAACGATCTTCAGTTGGCTCAAGGGAAACTTCAGAAGACCCTGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTTAAGTATAGAGAGGAATTATCAAGGCCTATACAAGAGGCAATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTGCGGATCTTCTCTGATGATAAATGTGAAGGTGTTGGTTCATCGGAAGAGGATCAAGACAATAGTGGAGGAGAAACAGAACTGCCCGAGATTGATCCCCGAGCAGAAGACCGTGAACTTAAAAACCACTTGCTGAGGAAATACAGTGGTTACCTAAGTAGCCTTAAGCAAGAACTTTCCAAGAAAAAAAAGAAAGGGAAACTACCTAAAGATGCTAGGCAAAAGCTACTTAATTGGTGGGAATTACATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAGTCTACTGGTTTGGACCAAAAGCAAATAAATAATTGGTTCATAAATCAAAGGAAGAGGCATTGGAAACCATCTGAAGACATGCAATTCATGGTGATGGATGGCCTGCATCCACAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1143 0.4383 MEEYTNNNHLSENTGPSPSPRPNFLYSSGTGGGNHHNHHHHHHHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHSPIFHYPLMRGTLHNTSTTMHPQQGGSPTNSSEVEAIKAKIIAHPQYSNLLDAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSVGSRETSEDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGVGSSEEDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0329 380 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 372 - -
Apr9g0329 380 SMART KNOX2_2 170 221 IPR005541 GO:0003677|GO:0005634
Apr9g0329 380 SMART KNOX1_2 119 163 IPR005540 GO:0003677|GO:0005634
Apr9g0329 380 Pfam KNOX2 domain 174 220 IPR005541 GO:0003677|GO:0005634
Apr9g0329 380 Pfam KNOX1 domain 120 162 IPR005540 GO:0003677|GO:0005634
Apr9g0329 380 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Apr9g0329 380 ProSitePatterns 'Homeobox' domain signature. 320 343 IPR017970 GO:0000981|GO:0006355
Apr9g0329 380 SMART HOX_1 284 349 IPR001356 GO:0003677
Apr9g0329 380 MobiDBLite consensus disorder prediction 1 33 - -
Apr9g0329 380 SUPERFAMILY Homeodomain-like 283 358 IPR009057 -
Apr9g0329 380 Pfam ELK domain 262 283 IPR005539 GO:0003677
Apr9g0329 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 372 - -
Apr9g0329 380 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Apr9g0329 380 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Apr9g0329 380 MobiDBLite consensus disorder prediction 1 46 - -
Apr9g0329 380 MobiDBLite consensus disorder prediction 231 259 - -
Apr9g0329 380 Gene3D - 287 349 - -
Apr9g0329 380 MobiDBLite consensus disorder prediction 61 82 - -
Apr9g0329 380 SMART ELK_2 179 199 IPR005539 GO:0003677
Apr9g0329 380 SMART ELK_2 262 283 IPR005539 GO:0003677
Apr9g0329 380 CDD homeodomain 294 346 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0329 Apr-Chr9 4401899 4406170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0329 59 380 Homeobox Transcription Factor Family AT4G08150 71.299 1.68e-156 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr9g0329 KNOX2 5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0329 - - gmx:100800822 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0329 9 4401899 4406170 Apr9g0329 9 4401899 4406170 ECH