Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0313 ATGGAGAATGATATGTACAGTGCACCACTGGACATGGCTGGTCGAAATTCTAATGTCATAGAGGGAATTACACAGCATTTTGCACCAAAGCCACTCATTTATTGCTATTCATTTGACCTCAATAACCAAAACCCCATCATAAATGGAATTCCAATACTTGCTGGAGAGCAAGGTGAACCTATCACTACAAGTAATGTCCATGACGAGGGTCGCATCATAAATCCTCCTGGTGTTGCTGGTTCCAATTCTTTTGTTACATCACAAGGAAAGAATTTTGTGGGAGATGCCTCAAATCTCATTAACAACGATTTTCAAGAGCATTTAGCTGGAGGAAGGCCAATTACTCCAGCTTCAATTGCTGCTAGAATTGGTCTTCAAGAAACTTTAGGGAATTCGACAACTTTGTCTCCGTCTGTCTGTTCATTGGAGGCATTAGGACCATATATCTTCAATAATTGGCAAGATACATCAAACCCTTTGCCTGCAACTTTTGGTGATCATGGCTATGATGAAGTACATTGTAATGGTAAGTGGAATGTCAACAAGTTTCCAAAAGCTCAAGAGGTTGATGGGACTGGATTCTTGGCTCATTCATCCATAGGAAACCTGGATCCCAGTGGATGGACATCGTCAAATATTGCAAACTTAGCCAATCTTGCTTACAATTCCTCTAATTGTAGTAATGAGCTATCACTAAGTCTTGCAAGATCTCCAACTACGGGTCAGTGCTCAGAAATGAGTTGCTCCGATGTGTCACATTGCATGAATGGAACAAAGTCAGGCTTGGAGCAGCCCTCATGCAGCAGTAAGGAACTGTCTATGAGTTTAGGTTCAAACAAACATGTCCAGTTTTCACCAGCAATCTTAGGGTCCAGATATCTTGCTGTAATTCAAGAGATACTTGCTCAAATTGCAACATATTCATTTGAAAATGTAGAACAGGTAAATTATTCAGCTGCTGGTGTTAAAGCAGGAGGAAATAAATATACTTCAGTTTTCATGCCAAAGAGAAGGGTAGCAATAAATCAAAATGTAAATTCTATGTCTGAAGCACATGTAGAATCCCCATTACAAAGACATGCAGCTGAACCAAACAAATCCCAACTGCTCATGCTTCTACAGCTGGTGGACAATCGATATAGTCAGTGTTTGGATGAGATTCATACTGTTGTATCTGCATTCCATGCTGCTACTGAGCTGGATCCACACATGCATGCTCATTTTGCTCTTCAAACGATCTCTCTCCTGTACAAGGACTTGCGCGAGAGGATTAGCAATTGTATTCTTGCCATGGGATCAAATTTTAACAGTTCATGCTCAGAAGAGGAGATGGAATGGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAGTTGAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCTGAAAGATCTGTCTCGGTTCTACGTGCTTGGATGTTTCAGAACTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACCAGAAGCCAGGTATCCAATTGGTTTATAAATGCACGTGTGAGGCTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTAGAAATGAAGAAGGAATGGAGAGCACCCATAGAGGCCGGATAAGCATGAACAATCAAATGTTGAATATCAATTAA 1707 0.4071 MENDMYSAPLDMAGRNSNVIEGITQHFAPKPLIYCYSFDLNNQNPIINGIPILAGEQGEPITTSNVHDEGRIINPPGVAGSNSFVTSQGKNFVGDASNLINNDFQEHLAGGRPITPASIAARIGLQETLGNSTTLSPSVCSLEALGPYIFNNWQDTSNPLPATFGDHGYDEVHCNGKWNVNKFPKAQEVDGTGFLAHSSIGNLDPSGWTSSNIANLANLAYNSSNCSNELSLSLARSPTTGQCSEMSCSDVSHCMNGTKSGLEQPSCSSKELSMSLGSNKHVQFSPAILGSRYLAVIQEILAQIATYSFENVEQVNYSAAGVKAGGNKYTSVFMPKRRVAINQNVNSMSEAHVESPLQRHAAEPNKSQLLMLLQLVDNRYSQCLDEIHTVVSAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGSNFNSSCSEEEMEWSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKACRNEEGMESTHRGRISMNNQMLNIN* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0313 568 Pfam Associated with HOX 288 425 IPR006563 -
Apr9g0313 568 SMART prehox3 282 426 IPR006563 -
Apr9g0313 568 Pfam Homeobox KN domain 486 525 IPR008422 GO:0003677|GO:0006355
Apr9g0313 568 SUPERFAMILY Homeodomain-like 471 538 IPR009057 -
Apr9g0313 568 CDD homeodomain 469 530 IPR001356 GO:0003677
Apr9g0313 568 SMART HOX_1 469 533 IPR001356 GO:0003677
Apr9g0313 568 ProSiteProfiles 'Homeobox' domain profile. 466 529 IPR001356 GO:0003677
Apr9g0313 568 PANTHER HOMEOBOX PROTEIN ATH1 10 564 - -
Apr9g0313 568 Gene3D - 472 551 - -
Apr9g0313 568 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0313 Apr-Chr9 4086571 4090134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0313 228 542 Homeobox Transcription Factor Family AT4G32980 56.740 1.42e-107 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Apr9g0313 POX 5.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0313 - - gmx:100812648 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0313 9 4086571 4090134 Apr5g1410 5 18200319 18202744 PCT