Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0302 ATGACTCCTGTTTCTCTGAACCCACCACCAGGTCCTTCCATACAAGGTCACACCCAACTCTTCATTTCTCCTAATAATCAGGACTGCCTTACCTTATTTAACATACTTGATCCAAGGCAAGCCTTTGAGTTTAGAGAAAATTATCCTCAGGATGATGATAAGATGGTATTGAATCATGATGGATCATCAAGCAATAATCAACTTTGCAATTCATCCTTCATTTCACCTGCGCCAGTTATGGATGATCCAAGCAGCGCATGTGACCGTGATATATCCTTACACAAAATGGACGGGGAAGATGGCAAAAATGGTCACGGATCTGTGAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGACCCAGTACTAGTCCAGTCACTGACAAAGCAATCAAAAGTACTACTATTTCTCCAAGTTCAAGATTCCAAAATCAAGGGTACGAAAATCGGTACAGCCAAAGAAGCCCTCGTAACAATGGCAGTAGCATCACTAGGGTTTGTTCGGATTGTAATACAAGCAGTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCCAAGTCGCTTTGCAATGCCTGTGGCATTAGACAAAGGAAAGCAAGAAGGGCAATGGCAGAAGCAGCAAATGGTTTGGCCACTCCCACGAATAATGCAGCATCCACAAAGACCAGAGTGCATAACAAAGAGAAAAAGTCTCGAACAAACCATTTTGCACAGTTGAAGAACAAGCACAAGTCCAGTACTACAACCAGTTCAGCCTCATCTGAGGGAGTGAGAAAGTTTGAATATTTCAAAGACTTCACCATAAGTTTGAGGAATAACACTGCTTTTCCACAAGTGTTTCCAAGGGATGAAGTAGCTGAGGCAGCATTGCTTCTGATGGACTTGTCTTGTGGTTTTGTTCACTTATAA 918 0.4248 MTPVSLNPPPGPSIQGHTQLFISPNNQDCLTLFNILDPRQAFEFRENYPQDDDKMVLNHDGSSSNNQLCNSSFISPAPVMDDPSSACDRDISLHKMDGEDGKNGHGSVKWMSSKMRLMKKMMRPSTSPVTDKAIKSTTISPSSRFQNQGYENRYSQRSPRNNGSSITRVCSDCNTSSTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAANGLATPTNNAASTKTRVHNKEKKSRTNHFAQLKNKHKSSTTTSSASSEGVRKFEYFKDFTISLRNNTAFPQVFPRDEVAEAALLLMDLSCGFVHL* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0302 305 MobiDBLite consensus disorder prediction 122 165 - -
Apr9g0302 305 MobiDBLite consensus disorder prediction 129 165 - -
Apr9g0302 305 Pfam GATA zinc finger 170 203 IPR000679 GO:0006355|GO:0043565
Apr9g0302 305 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 50 304 - -
Apr9g0302 305 ProSitePatterns GATA-type zinc finger domain. 170 195 IPR000679 GO:0006355|GO:0043565
Apr9g0302 305 MobiDBLite consensus disorder prediction 215 255 - -
Apr9g0302 305 SMART GATA_3 164 224 IPR000679 GO:0006355|GO:0043565
Apr9g0302 305 CDD ZnF_GATA 169 206 IPR000679 GO:0006355|GO:0043565
Apr9g0302 305 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 50 304 - -
Apr9g0302 305 Gene3D - 163 209 IPR013088 GO:0006355|GO:0008270
Apr9g0302 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 165 204 - -
Apr9g0302 305 ProSiteProfiles GATA-type zinc finger domain profile. 164 200 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0302 Apr-Chr9 3961169 3963743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0302 104 304 C2C2-Gata Transcription Factor Family AT4G26150 36.486 1.47e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr9g0302 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0302 - - gmx:100780326 364.385