Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr9g0294 ATGATGAAAGGTTTGGTGGTGGAGGAAAATATGTCCAATTTGACGTCTGCATCGAGTGAAATAAGTGGTTCTTCCGGAACCAGATATGACAACACTTCTGATCTCTATTATGCTCAGTACTCTTCTGCTTCAAATCAAGAACCACAACTCAAAAGGAAGAGAAGAGTTCCGGGCCACCCAGACCCTGGGGCAGAAGTGATAGCCTTGACTCCACAGACCCTTTTGGCAACAAACCGGTTCTTTTGTGATATTTGTCAAAAAGGGTTTCAAAGAGATCAAAATCTACAGCTTCATCGAAGAGGGCATAATTTGCCATGGAAGTTAAAGAAAAGGAATATCAAAGAAGCAAGAAAAAAAGTATATGTGTGCCCAGAGCCAACATGCCTTCACCATGACCCATTAAGGGCCCTCGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAGCATCATGCAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAATGTTATGCAGTACACTCAGATTGGAAAGCCCACTCCAAAATTTGCGGCACCAGAGAATATATATGTGACTGTGGAACCGTTTTCTCTAGGAGGGATTATTTTATTACTCACAGAGCCTCTTGTGATGCCTTAACTCAAGAGAGTGGTAGGTTGAACCTTGAAGATAACGCCAAATTTCATAGTCATGTCCTTCAAGCACCATCACTAAAAAGAGAACAAGAGTTTAACTTAGGTCTATCAAGAACTCCATCATGGTTGGCTTCTCCAATGGCTGAAGAAGTTGTCCATGATCAAACAAATAGGGCCTTAGATTTCTCCTCATCACCATTATTCCCAACACATGTCAACCATGAAAACCCTAACCCTACAACTACTTTGCTTCGTTCTTTTCATTCCATTACTTCTTCTCCTCAAATGTCATCAGCCACTCCTTTGATGCAAAAGGCTTCACAAATAGGTGTAACAATGAGCAAAATTACACCTTCAGAAGCCTTGCTTAGACCCCACTTATTATTGCAAGAGATTCACGTGCCTGAATATACAACAAGGTACATGGCTTCATCCTCAGCTTTTTATGGAATGGTTATACCTTCACGTGAAGAATAG 1098 0.4153 MMKGLVVEENMSNLTSASSEISGSSGTRYDNTSDLYYAQYSSASNQEPQLKRKRRVPGHPDPGAEVIALTPQTLLATNRFFCDICQKGFQRDQNLQLHRRGHNLPWKLKKRNIKEARKKVYVCPEPTCLHHDPLRALGDLTGIKKHFFRKHHAEKKWKCEKCSKCYAVHSDWKAHSKICGTREYICDCGTVFSRRDYFITHRASCDALTQESGRLNLEDNAKFHSHVLQAPSLKREQEFNLGLSRTPSWLASPMAEEVVHDQTNRALDFSSSPLFPTHVNHENPNPTTTLLRSFHSITSSPQMSSATPLMQKASQIGVTMSKITPSEALLRPHLLLQEIHVPEYTTRYMASSSAFYGMVIPSREE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr9g0294 365 Gene3D Classic Zinc Finger 143 220 - -
Apr9g0294 365 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 327 - -
Apr9g0294 365 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Apr9g0294 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Apr9g0294 365 SMART c2h2final6 80 102 IPR013087 -
Apr9g0294 365 SMART c2h2final6 121 151 IPR013087 -
Apr9g0294 365 SMART c2h2final6 157 177 IPR013087 -
Apr9g0294 365 Pfam Zinc-finger double-stranded RNA-binding 80 102 IPR022755 -
Apr9g0294 365 SUPERFAMILY beta-beta-alpha zinc fingers 78 103 IPR036236 -
Apr9g0294 365 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 327 - -
Apr9g0294 365 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr9g0294 Apr-Chr9 3835372 3837797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr9g0294 7 214 IDZ Gene Family AT1G55110 70.755 1.45e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr9g0294 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr9g0294 K25870 - gmx:100783557 424.476